Permalink
Switch branches/tags
Nothing to show
Find file Copy path
Fetching contributors…
Cannot retrieve contributors at this time
21 lines (20 sloc) 1.1 KB
loading taxonomic nodes from: db/genbank/nodes.dmp.gz
loading taxonomic names from: db/genbank/names.dmp.gz
loading k-mer DB from: db/delmont-k31.lca
loading taxonomic nodes from: db/genbank/nodes.dmp.gz
loading taxonomic names from: db/genbank/names.dmp.gz
loading k-mer DB from: db/tully-k31.lca
loading taxonomic nodes from: ../sourmash/genbank/genbank/nodes.dmp.gz
loading taxonomic names from: ../sourmash/genbank/genbank/names.dmp.gz
loading k-mer DB from: ../sourmash/genbank/genbank/genbank-k31.lca.gz
loading all signatures: delmont-genome-sigs
loading from cache: delmont-genome-sigs.pickle
...loaded 957 signatures at k=31
TARA_MED_MAG_00078 has multiple LCA at rank 'class': Acidimicrobiia, Actinobacteria
TARA_ASE_MAG_00014 has multiple LCA at rank 'class': Acidimicrobiia, Actinobacteria
TARA_RED_MAG_00048 has multiple LCA at rank 'class': Gammaproteobacteria, Acidimicrobiia
TARA_ION_MAG_00058 has multiple LCA at rank 'species': Pseudomonas oleovorans, Pseudomonas mendocina
for delmont-genome-sigs found 957 signatures;
out of 957 that could be classified, 4 disagree at some rank.
class: 3
species: 1