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Octocat-spinner-32-eaf2f5

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Octocat-spinner-32 db
Octocat-spinner-32 lib
Octocat-spinner-32 templates
Octocat-spinner-32 tests
Octocat-spinner-32 www Fix infinite reloading error when no results are found February 06, 2014
Octocat-spinner-32 .gitignore
Octocat-spinner-32 README.md
Octocat-spinner-32 check.py
Octocat-spinner-32 configure-cgi-path.py
Octocat-spinner-32 index-db.py
README.md

An intentionally very simple and somewhat programmable BLAST Web server.

C. Titus Brown ctb@msu.edu

Copyright: 2013, Michigan State University. License: BSD


Requirements:

  • Python 2.x, x >= 5.
  • screed
  • jinja2

Suggested additional packages:

  • virtualenv

Installation:

  • make a new virtualenv:

     python -m virtualenv env
    
  • activate virtualenv and install screed and jinja2

     . env/bin/activate
     pip install git+https://github.com/ged-lab/screed.git
     pip install jinja2
    

Configure:

  • point #! at top of www/*.cgi at the virtualenv python

  • edit www/_mypath.py to point to the right lib/ directory

  • edit lib/blastkit_config.py to contain the right paths.

  • create www/files & chmod appropriately:

     mkdir www/files
     chmod a+rwxt www/files
    
  • configure blastall location

  • check databases for indexing.

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