diff --git a/rules/taxonomic_profiling/strainphlan.smk b/rules/taxonomic_profiling/strainphlan.smk index 1b9559b..277a4ac 100755 --- a/rules/taxonomic_profiling/strainphlan.smk +++ b/rules/taxonomic_profiling/strainphlan.smk @@ -16,7 +16,7 @@ if config["strain_level_profiling"]["strainphlan"]: err_message += "If you do not want to run MetaPhlAn or StrainPhlAn, set 'metaphlan: False' and 'strainphlan: false' in config.yaml" raise WorkflowError(err_message) if not spa_config["clade_of_interest"]: - available_clades=f"{LOGDIR}/strainphlan/available_clades.txt", + available_clades=f"{OUTDIR}/strainphlan/available_clades.txt", all_outputs.append(available_clades) user_messages.warn("Clade of interest not specified in strainphlan section of config.yaml.") user_messages.warn("Based on your samples strainphlan will create a list of available clades in output/strainphlan/available_clades.txt")