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A collection of shell and perl scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in MrBayes posteriors.
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
Software for computing the unrooted subtree prune-and-regraft distance between topologies
Sample trees from a random walk on the subtree prune-and-regraft (SPR) treespace graph
Find all trees in a given SPR neighborhood