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Cython's build_ext starts using and modifying distutils' options attributes directly instead of making a copy of them.
If using setuptools' setup function (most likely the case) and Cython is installed then setuptools will successfully (and unconditionally) import Cython's build_ext, therefore Cython's modifications to these lists do happen and is, more than anything, confusing whenever using directly or subclassing distutils' build_ext that these options appear out of "nowhere".
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Unexpected propagation of Cython.Distutils.build_ext's options
Unexpected propagation of Cython's build_ext options
Apr 21, 2018