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add junit and first functional tests
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| package functional; | ||
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| /* | ||
| * Copyright (c) 2009-2018. Authors: see NOTICE file. | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
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| import static org.junit.jupiter.api.Assertions.assertEquals; | ||
| import static org.junit.jupiter.api.Assertions.assertNotNull; | ||
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| import be.cytomine.client.Cytomine; | ||
| import be.cytomine.client.CytomineException; | ||
| import be.cytomine.client.collections.SoftwareCollection; | ||
| import be.cytomine.client.models.*; | ||
| import be.cytomine.client.sample.SoftwareExample; | ||
| import org.apache.log4j.BasicConfigurator; | ||
| import org.apache.log4j.Logger; | ||
| import org.apache.log4j.PropertyConfigurator; | ||
| import org.json.simple.JSONArray; | ||
| import org.json.simple.JSONObject; | ||
| import org.junit.jupiter.api.*; | ||
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| import java.util.ArrayList; | ||
| import java.util.Date; | ||
| import java.util.List; | ||
| import java.util.UUID; | ||
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| class FunctionalTest { | ||
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| private static final Logger log = Logger.getLogger(FunctionalTest.class); | ||
| private static String host; | ||
| private static String publicKey; | ||
| private static String privateKey; | ||
| private static Cytomine cytomine; | ||
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| private static Project project; | ||
| private static ImageInstance image; | ||
| private static Term term; | ||
| @BeforeAll | ||
| static void initAll() throws CytomineException { | ||
| BasicConfigurator.configure(); | ||
| PropertyConfigurator.configure("log4j.properties"); | ||
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| host = System.getProperty("host"); | ||
| assertNotNull(host, "host, publicKey, privateKey"); | ||
| publicKey = System.getProperty("publicKey"); | ||
| assertNotNull(publicKey, "host, publicKey, privateKey"); | ||
| privateKey = System.getProperty("privateKey"); | ||
| assertNotNull(privateKey, "host, publicKey, privateKey"); | ||
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| log.info("Connection to cytomine..."); | ||
| cytomine = new Cytomine(host,publicKey,privateKey); | ||
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| Ontology ontology = cytomine.addOntology(UUID.randomUUID().toString()); | ||
| project = cytomine.addProject(UUID.randomUUID().toString(),ontology.getId()); | ||
| term = cytomine.addTerm("testTerm","#000000",ontology.getId()); | ||
| } | ||
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| @BeforeEach | ||
| void init() { | ||
| } | ||
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| @Test | ||
| void getCurrentUser() { | ||
| try { | ||
| log.info("getCurrentUser"); | ||
| assertEquals(cytomine.getCurrentUser().get("username"), "admin", "Not the expected user"); | ||
| } catch (CytomineException e) { | ||
| e.printStackTrace(); | ||
| } | ||
| } | ||
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| @Test | ||
| void upload() throws CytomineException { | ||
| if(image != null) return; | ||
| log.info("upload"); | ||
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| assert cytomine.getStorages().size() > 0; | ||
| Storage storage = cytomine.getStorages().get(0); | ||
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| int nbImages = cytomine.getImageInstances(project.getId()).size(); | ||
| assert nbImages == 0; | ||
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| Cytomine cytomineUpload = new Cytomine(System.getProperty("uploadUrl"), publicKey, privateKey); | ||
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| JSONArray response = cytomineUpload.uploadImage(System.getProperty("imgPath"), project.getId(), storage.getId(), host, null, true); | ||
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| assert response.size() == 1; | ||
| assert response.get(0) instanceof JSONObject; | ||
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| JSONObject test = (JSONObject) response.get(0); | ||
| assert test.get("status") instanceof Long; | ||
| assert (Long) test.get("status") == 200; | ||
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| nbImages = cytomine.getImageInstances(project.getId()).size(); | ||
| assert nbImages == 1; | ||
| image = cytomine.getImageInstances(project.getId()).get(0); | ||
| } | ||
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| @Test | ||
| void retrieval() throws CytomineException { | ||
| if(image == null) upload(); | ||
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| log.info("retrieval"); | ||
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| Long width = Long.parseLong(image.get("width").toString()); | ||
| Long height = Long.parseLong(image.get("height").toString()); | ||
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| String polygon = "POLYGON (("+((width/2)-20)+" "+((height/2)-20)+", "+((width/2)-20)+" "+((height/2)+20)+", "+((width/2)+20)+" "+((height/2)+20)+", "+((width/2)+20)+" "+((height/2)-20)+", "+((width/2)-20)+" "+((height/2)-20)+"))"; | ||
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| List<Long> terms = new ArrayList<>(); | ||
| terms.add(term.getId()); | ||
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| Annotation annot = cytomine.addAnnotationWithTerms(polygon, image.getId(),terms); | ||
| try { | ||
| Thread.sleep(2500); | ||
| } catch (InterruptedException e) { | ||
| e.printStackTrace(); | ||
| } | ||
| Annotation annot2 = cytomine.addAnnotation(polygon, image.getId()); | ||
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| try { | ||
| Thread.sleep(2500); | ||
| } catch (InterruptedException e) { | ||
| e.printStackTrace(); | ||
| } | ||
| JSONObject response = cytomine.getSimilaritiesByRetrieval(annot2.getId()); | ||
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| assertEquals(((JSONObject)((JSONArray) response.get("annotation")).get(0)).get("id"), annot.getId(), "Annotation is not returned by retrieval"); | ||
| assertEquals(((JSONObject)((JSONArray) response.get("term")).get(0)).get("id"), term.getId(), "Term is not returned by retrieval"); | ||
| } | ||
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| @Test | ||
| void runExistingSoftware() throws CytomineException { | ||
| if(image == null) upload(); | ||
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| log.info("runSoftware"); | ||
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| SoftwareExample.addSoftwareComputeTermArea(cytomine); | ||
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| SoftwareCollection softwares = cytomine.getSoftwares(); | ||
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| Long computeTermAreaId = null; | ||
| Long termsParamId = null; | ||
| Long imagesParamId = null; | ||
| for(int i=0;i<softwares.size();i++){ | ||
| if(softwares.get(i).get("name").equals("ComputeTermArea")){ | ||
| computeTermAreaId = softwares.get(i).getId(); | ||
| } | ||
| } | ||
| Software software = cytomine.getSoftware(computeTermAreaId); | ||
| JSONArray parameters = (JSONArray) software.get("parameters"); | ||
| for(int i= 0; i<parameters.size(); i++){ | ||
| JSONObject param = (JSONObject) parameters.get(i); | ||
| if(param.get("name").equals("terms")){ | ||
| termsParamId = Long.parseLong(param.get("id").toString()); | ||
| } else if(param.get("name").equals("images")){ | ||
| imagesParamId = Long.parseLong(param.get("id").toString()); | ||
| } | ||
| } | ||
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| cytomine.addSoftwareProject(computeTermAreaId,project.getId()); | ||
| User userJob = cytomine.addUserJob(computeTermAreaId, cytomine.getCurrentUser().getId(), project.getId(), new Date(), null); | ||
| Job job = cytomine.getJob((Long) userJob.get("job")); | ||
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| cytomine.addJobParameter(job.getId(), termsParamId, ""+term.getId()+""); | ||
| cytomine.addJobParameter(job.getId(), imagesParamId, ""+image.getId()+""); | ||
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| assertEquals(0L,job.get("status"),"job must not be launched yet"); | ||
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| log.info("run ComputeTermArea"); | ||
| cytomine.executeJob(job.getId()); | ||
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| try { | ||
| Thread.sleep(5000); | ||
| } catch (InterruptedException e) { | ||
| e.printStackTrace(); | ||
| } | ||
| job = cytomine.getJob((Long) userJob.get("job")); | ||
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| assertEquals(3L,job.get("status"),"job must be successful"); | ||
| } | ||
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| @AfterEach | ||
| void tearDown() { | ||
| } | ||
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| @AfterAll | ||
| static void tearDownAll() { | ||
| } | ||
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| } |