Cytoscape Automation Wiki
This wiki contains supporting documentation for Cytoscape Automation scripters and developers.
Frequently Asked Questions about Cytoscape Automation -- a good place to start
Step-wise installation instructions leading to RCy3 vignettes.
How to easily experiment with Cytoscape Automation
An index of links to useful Workflows in scripting languages such as R and Python
A collection of sample scripts that use Cytoscape Automation
How to add Automation to an App you already maintain
How to build CI Responses for your Automation Functions.
How to access an app's automation features from clients, web browsers, and the Swagger UI
How to write integration tests in a scripting language to test your App
A collection of sample Apps that implement Cytoscape Automation
- Cytoscape Function Best Practices ... to follow when implementing Cytoscape Functions via JAX-RS
- Swagger Best Practices ... to follow when documenting automation functions
- Cytoscape Command Best Practices ... to follow when implementing Cytoscape Commands
How to add Automation to web page