How to use the CircleCI workflow
Automating the Rmd code chunk testing
How to use this
Check if there is an error in the git repo HEAD Rmds with the CircleCI badge etc.
The CircleCI runs all Rmds in https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/R/notebooks and generate the report as HTML.
You can check the result HTML in the CircleCI
We need to replace
knitr::opts_chunk$set( eval=FALSE )
knitr::opts_chunk$set( eval=TRUE )
in the all Rmds.
How can I update the CircleCI configulation?
You can update it with editing https://github.com/cytoscape/cytoscape-automation/blob/master/.circleci/config.yml
When will the CircleCI run?
Every time you commit https://github.com/cytoscape/cytoscape-automation, it will run.