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`animate: 'end'` support for CoSE #1646

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maxkfranz opened this Issue Dec 7, 2016 · 0 comments

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maxkfranz commented Dec 7, 2016

Similar to the CoSE-Bilkent feature. We already have a feature to just update to the end positions if the layout runs quickly. This would expand on this feature by calling nodes.layoutPositions() with an animation if the layout finishes quickly.

@maxkfranz maxkfranz added this to the 3.1.0 milestone Dec 7, 2016

@maxkfranz maxkfranz modified the milestones: 3.2.0, 3.1.0 Feb 22, 2017

maxkfranz added a commit that referenced this issue Jun 30, 2017

@maxkfranz maxkfranz closed this Jun 30, 2017

metincansiper added a commit to iVis-at-Bilkent/cytoscape.js that referenced this issue Oct 8, 2018

Upgraded to version 3.2.16 (#3)
* Add 3.1.2

* Add 3.1.2

* Preparing to publish 3.1.2

* Smaller file set sent to gh-pages

* The non-min file isn't needed

* Disable sourcemaps for dist builds (to save space in repo)

* Just use jq for now

* rm angular link

* Smaller file set send to gh-pages

* The non-min file isn't needed

* Disable sourcemaps for dist builds (to save space in repo)

* Just use jq for now

* rm angular link

* Remove duplicate line

* Mentions of `makeLayout()` in the docs should be changed to `layout()`
for 3.x cytoscape#1872

* Mentions of `makeLayout()` in the docs should be changed to `layout()`
for 3.x cytoscape#1872

* `animate: 'end'` support for CoSE cytoscape#1646

* Document `eles.toArray()` cytoscape#1817

* - Add `transform` option to `nodes.layoutPositions()`
- Correct (node, i) order for internal `boundingBoxAt()` function

Ref : `nodes.layoutPositions()` option to transform final `{ x, y }` cytoscape#1695

* Implement the `animateFilter` option for `layoutPositions()`

Ref : `animateFilter()` option for `eles.layoutPositions()` cytoscape#1870

* Don't test master on node < 4

* - Invalidate the cached container client co-ordinates on animationend and transitionend for container and ancestors
- Co-ordinate projection takes into account effective scale

Ref : cytoscape#1756

* Remove duplicate line

* Merge branch 'docs/includeOverlays' of https://github.com/josephst/cytoscape.js into josephst-docs/includeOverlays

* Extra data passed to `.emit()` is not passed to bubbled handlers cytoscape#1877

* Extra data passed to `.emit()` is not passed to bubbled handlers cytoscape#1877

* Position animations can apply to locked nodes cytoscape#1876

* Position animations can apply to locked nodes cytoscape#1876

* Spring animation should always end at 100% cytoscape#1875

* Spring animation should always end at 100% cytoscape#1875

* Re-organise core animation code so that the Animation object can be
cleaned up in future

* Remove jscs

* Add contributor guides to accompany blog post cytoscape#1840

Someone the old merge was overridden

* Add contributor guides to accompany blog post cytoscape#1840

Someone the old merge was overridden

* Document `eles.removeStyle()` cytoscape#1883

* Document `eles.removeStyle()` cytoscape#1883

* Document `eles.getElementById()` cytoscape#1880

* Document `eles.cy()` cytoscape#1879

* Explicitly list supported compound shapes in the style section of the
docs cytoscape#1892

* Explicitly list supported compound shapes in the style section of the
docs cytoscape#1892

* Add 3.1.3

* Add 3.1.3

* Preparing to publish 3.1.3

* Intersections need to be cached for bundled beziers for *-endpoint: outside-to-line

Ref : Reduce intersection calculations for edges cytoscape#1478

* Intersections need to be cached for bundled beziers for *-endpoint: outside-to-line

Ref : Reduce intersection calculations for edges cytoscape#1478

* Specify endpoints & edge type for compounds in the default stylesheet cytoscape#1669

* Organise the collection dimensions code a bit

* Remove 'use strict' and let webpack handle it

* API for accessing calculated points for edges cytoscape#1552

Docs TODO

* Docs for points functions

* Fixed benchmark gulp targets

* Doc maker can be run directly; fix some issues building the docs on unstable

* Bluebird is still needed for running tests on node@4

* - Add math functions for converting positions : model <=> rendered
- Refactor zoom() function to use a separate getter
- Use position conversion function for animation
- Micro-optimisations / clean up for animation()
- Allow animating via zoom() syntax
- Docs for zoom object animation
- Misc linting

* Document background event for nodes cytoscape#1711

* - Add ghost properties
- Lint and var => let for drawing-elements.js
- Bounding box takes into account ghost properties
- Split drawing node steps into separate functions
- var => let for drawing-nodes.js
- Nodes have duplicated fill and stroke for `ghost: yes`
- var => let for drawing-edges.js
- Refactor edge `overlayInstead` flag : use separate, internal functions instead
- Separate out steps for drawing edges into closures to make painter's algorithm clearer
- Ghost properties inherit element opacity

Ref : Node ghost visual style cytoscape#1197

* - Refactor darken
- Node paint functions allow independent opacity values
- Ghost takes into account { shape, images, pie, darken, border }
- Separate style setup for nodes
- Darken and images should take into account the parent effective opacity (and the ghost effective opacity)
- Documentation for ghost properties

Ref : Node ghost visual style cytoscape#1197

* Fixes tests re. zoom refactoring changes

Ref : Animate zoom about a point like `cy.zoom({ level, position })`

* Barrel shape: set max values for curve width/height offsets

* Improve issue template

* Improve issue template

* Correct spelling

* Correct spelling

* Fix edge types demo : Points should be specified as arrays or separated
by spaces

* Fix edge types demo : Points should be specified as arrays or separated
by spaces

* Add cytoscape-canvas extension to list

* Add cytoscape-canvas extension to list

* Add to "who uses" list
- SNIK from U. Leipzig, IMISE
- TissueNet and DiffNet from BGU

* Add to "who uses" list
- SNIK from U. Leipzig, IMISE
- TissueNet and DiffNet from BGU

* Add euler layout to extension list

* Add euler layout to extension list

* Add 3.1.4 to version list

* Add 3.1.4 to version list

* Preparing to publish 3.1.4

* Add Zenodo DOI badge and release instructions for Zenodo DOIs

* Add Zenodo DOI badge and release instructions for Zenodo DOIs

* More complete Set internal polyfill

* set.delete() not set.remove()

* Improved Set

* Refactored element classes to use Set (cytoscape#1899)

* Test

* test2

* Refactored element classes to use Set

* changed gulpfile

* Benchmark testing

* Benchmark testing

* Benchmark testing

* Fixed typo, required set.js, copied set correctly

* Fixed some formatting

* Improves Set iterator

* Remove unneeded .add() block; use Set constructor cytoscape#1843

* Bluebird and gulp-download are dev dependencies, not dependencies

* Reduced (only high performance) feature set for internal Set polyfill

* Added benchmark tests for classes and fixed polyfill for eles.classes() (cytoscape#1903)

* Added benchmark tests for classes

* fixed polyfill in classes()

* Safer object use in Set polyfill

* Exporting JPG with hollow arrows makes them black cytoscape#1907

* Exporting JPG with hollow arrows makes them black cytoscape#1907

* Update style.md

* Document svg considerations  cytoscape#1856

* Document animateFilter and expose the option in each bundled layout cytoscape#1870

* Document eles.merge(), eles.unmerge() cytoscape#1818

* Document the transform option for `nodes.layoutPositions()`, document the option for each bundled layout.  cytoscape#1695

* Add the Kanji Map and Classcraft to "who uses" list cytoscape#914

* Add the Kanji Map and Classcraft to "who uses" list cytoscape#914

* Issue template should indicate that extension issues must be filed in
extension repos.

* Issue template should indicate that extension issues must be filed in
extension repos.

* Changing the arrow type does not update the calculated edge points cytoscape#1922

* Changing the arrow type does not update the calculated edge points cytoscape#1922

* Ensure that the `lastCurveStyle` value is set for haystack edges so that control point caching doesn't get false positives.

Edges do not follow nodes after several type changes cytoscape#1910

* Note that merge() and unmerge() can be used to treat a collection as
mutable in Notation cytoscape#1818

* Put svg considerations in the list, because the docs doesn't support more than 3 header levels. cytoscape#1856

* `transform` may not be worthwhile documenting officially for cose since it would only work when `animate:'end'` cytoscape#1695

* Ensure that the `lastCurveStyle` value is set for haystack edges so that control point caching doesn't get false positives.

Edges do not follow nodes after several type changes cytoscape#1910

* Add klay to layout extension list

* Add klay to layout extension list

* Make publishing reference in scaffolding section more general

* Make publishing reference in scaffolding section more general

* Add 3.1.5 to release list

* Add 3.1.5 to release list

* Preparing to publish 3.1.5

* Put license as first badge

* layoutDimensions() should allow for nil values for options.  Defaults
should be assigned for each field. cytoscape#1626

* Add 3.2.0 to the version list in the docs

* Update spread demo to use extension v1.3.1

* Preparing to publish 3.2.0

* Fix backticks in architecture section

* Preparing to publish 3.2.0

* Fix docs for eles.on()

* Delegated event callbacks do not have `this` set correctly cytoscape#1930

* Some versions of IE on some versions of Windows report `event.pointerType` as an int cytoscape#1931

* IE doesn't support `Number.MAX_SAFE_INTEGER` cytoscape#1932

(Also lint zsort)

* Only ES5 can be used in tests in order for them to run on older versions of Node

* Add 3.2.0 to version list in docs

* Reverse order for 3.2.1 and 3.2.0 in release list in docs

* Preparing to publish 3.2.1

* Remove `publish` script from package.json

* User thrashing of the compound dimensions cache during batching lowers performance cytoscape#1939

* Edge width and arrow scale should be taken into account for control point calculation caching cytoscape#1912

* Edge width should use the preferred units value, in case the units change. cytoscape#1912

* 'pos' in CRp.drawPie is not assigned. cytoscape#1935

* Dynamic change of text-rotation for edge is not reflected when curve-style is set to bezier cytoscape#1936

* `curve-style: bezier` for image and dagre demos cytoscape#1938

* Cached intersections should take into account bundle reversing in the pair edge set cytoscape#1942

* Bundled bezier edges should allow independent control point weights cytoscape#1950 cytoscape#1945

* Edge point functions descriptions not included in the docs cytoscape#1951

* - Emitter copies the listener list when removing listeners while emitting.
- Removing a listener exits the split events loop early on match.  It will only ever match once anyway, so the additional checks are wasteful.
- Fix indentation on emit().

cytoscape#1953

* More tests for Emitter cytoscape#1953

* "__________cytoscape_container" class repeatedly added to div on renderer re-init cytoscape#1955

* Clarify behavior and documentation when passing "empty collection" to fit, center, animate cytoscape#1954

* Add 3.2.2 to release list for docs

* Fix cose options in demo

* Add 2.7.19 - 2.7.24 to the releases list in the docs

* Preparing to publish 3.2.2

* Add CDNJS version badge in README.md cytoscape#1957

* Allow gulp targets to be used on old versions of node, pulling in webpack dependency on demand.

* Compatibility for IE and old versions of node for cytoscape#1843 cytoscape#1961

nvm use 6 && npm run build-cjs && nvm use 0.10 && npm run test-build

* Always use internal `Set`s and `Map`s cytoscape#1843 cytoscape#1961

* Fix unwanted empty() call on boundingBox

* Improvements to docs
- Remove dead "who uses" links
- Note env requirements cytoscape#1961
- List cytosnap

* Regression test for cytoscape#1965

* Bounding box updates fails for edges when headless with style enabled cytoscape#1970

* Add 3.2.3 and 2.7.25 to release list in docs

* Preparing to publish 3.2.3

* Rework triangle cross (cytoscape#1972)

* rework triangle cross wip

* Rework triangle cross
- base implementation off of triangle-tee
- compute crossline points to match edge width
- modify arrowshape collide and rough collide api to include edgeWidth as a parameter

* Removing a delegated listener when non-delegated listeners exist on a target cytoscape#1980

* `cy.resize()` is called just after init cytoscape#1988

In order to solve this, it's necessary for `this.load()`-- which inits dom listeners etc -- to be called when we get an `init` notification.  The `CanvasRenderer` writes to the container's attributes, and `load()` sets up a `MutationListener` to detect possible resizes made (e.g. by applying a class to the container).  The core sends an `init` notification when a new renderer is created.  This ensures that `load()` is always called after all renderer constructors are called.

* `cy.style()` is not always available cytoscape#1989

Make the default stylesheet available before creating the renderer and loading the external stylesheet.  When loaded, append the external stylesheet to the existing style.

* Add 3.2.4 to release list in docs

* Add Southwest Harbor Public Library to who-uses list

* Preparing to publish 3.2.4

* Fix `eles.toArray()` formatting in docs

* No box selection in compound nodes if parent is ungrabified cytoscape#1995

* Separate lines for badges for better alignment

* Use holes in depths to ensure that removals don't invalidate indicies.  `assignDepthsToEles()` cleans out holes.

Fix depth adjustment in breadthfirst layout cytoscape#1992

* Can't use the usual reverse-order for splicing in depths of BFS layout on account of saving the indices cytoscape#1992

* Fix spelling issues in "SVG considerations" in the docs cytoscape#2003

* `eleJson.scratch` fields should start with underscore in examples in docs cytoscape#1999

* Example for `eles.umerge()` is malformed in the docs cytoscape#1996

- Fixes formatting.
- Clarifies on what collections these functions should be used.

* Unbundled bezier edges sometimes don't render cytoscape#2005

Commit f07f5b8 causes the issue (according to git bisect).  It has an inconsistent signature for the refactored function put into `math`.  This fixes the issue by putting `padding` as the last parameter in the function signature.  That also makes `math.checkInEllipse()` more consistent with the other geometric shape functions.

* Add 3.2.5 to release list in docs

* Add CyberSift to who-uses section of the docs cytoscape#914

* Preparing to publish 3.2.5

* Add Zenodo and OMIC Tools links to docs; fix Younivise link

* Newly added elements should not have their style initially updated twice from false background image loading detection cytoscape#2016

Caused by : Allow for background image properties to be specified as multiples (i.e. arrays or space separated strings) cytoscape#1747

The check for whether background images are loading is incorrect, as the count of images does not take into account invalid/null entries.

* Adding the edge parameter to anonymous function

* `border-style: dotted` isn't applied properly cytoscape#2018

* Event names with dashes are not recognised cytoscape#2022

* Example for event namespace in the docs is reversed cytoscape#2023

* Add 2.7.26 and 3.2.6 to release list in docs

* Preparing to publish 3.2.6

* Revise queueing in the ElementTextureCache cytoscape#1998

(1) When an element is invalidated, remove any requests it may have from the queue.
(2) Update the bounding box of an existing request when a new request comes in.
(3) Do not check source and target positions for a delta when dequeueing.  This is not necessary, because (1) and (2) would create the same effect through invalidating the edge.

* Revise texture queueing requests re. bb, position, extraneous dequeues cytoscape#1998

- Remove remaining bb and position storing in element texture queueing requests.
- When a texture request comes in for an element with an existing cache at the specified level, ignore the request.

* Do not omit non-style-dirtying events from the per-element event list cytoscape#2026

Ref : Background images do not invalidate the element texture cache if only dirtying position events come in cytoscape#2026

* Add 3.2.7 to the release list in the docs

* Preparing to publish 3.2.7

* Automatically update the copyright year span in LICENSE when publishing a release cytoscape#2040

* Add 3.2.8 to release list in docs

* Preparing to publish 3.2.8

* Update to webpack@3 and disable all webpack node polyfills cytoscape#2051

* Add package-lock.json to allow for reproducible builds cytoscape#2051

* Add viewport event to the docs cytoscape#2048

* Selector function arg uses `this` in docs cytoscape#2057

* Add popper extension to the list of extensions in the docs

* `vee` edge arrow is missing from the docs cytoscape#2065

* `vee` edge arrow is misaligned with the line for a thick edge cytoscape#2066

* `triangle-backcurve` arrow can be be misaligned for thick edges cytoscape#2067

* Add 3.2.9 to the release list in the docs

* Preparing to publish 3.2.9

* The `remove` event is emitted on already removed elements cytoscape#2074

* Fixed redundant typo (appplication -> application) in demos

Signed-off-by: Olivier Gayot <olivier.gayot@sigexec.com>

* Cherrypick to master : Merge pull request cytoscape#2073 from d2fong/unstable

Slightly better approximation of barrel curve pts for line intersection

* Add 3.2.10, 2.7.28, & 2.7.27 to docs release list

* Preparing to publish 3.2.10

* For each 'style' dirty event, w.r.t. the element texture cache, manually diff the parent opacity.  Invalidate the descendants when the diff is non-empty.

Ref : Opacity of child node is not updated for certain zoom levels after parent opacity is overriden cytoscape#2078

* Correct errors in docs for `node.layoutDimensions()` cytoscape#2080

* Add 2.7.29 and 3.2.11 to the list of releases in the docs

* Preparing to publish 3.2.11

* Clean up dead links in the "used by" section and add MetagenomeScope

* Add node-html-label to the extension list cytoscape#2083

* Reverse order of visibility check and bad line / bad bezier checks in `CanvasRenderer.prototype.drawEdge()`, and add null check on `ele._private.rscratch.allpts`.

The visibility check is a historical check, used before the texture caching.  It's useful as a sanity check now, but it makes sense to check it before renderer scratchpad data (calculated rendered style), as cases like image export may call `drawEdge()` indiscriminately.  The null check on `allpts` is inexpensive and generally good practice, even though `allpts != null` for all visible edges.

Ref : TypeError during export to png/jpg if some edges were never shown before cytoscape#2096

* Include node@8 explicitly in `.travis.yml`

* Disable node@stable (i.e. currently v10) in `.travis.yml` as it doesn't
work with gulp.

It should be OK on the unstable (3.3) branch, as gulp is no longer used.

* Animation of percent property values (e.g. pie charts) not working cytoscape#2099

Normally, a value in preferred units can be parsed back in a cycle.  This is not the case for percent values.  The preferred values range on [0, 1] whereas they are parsed as implicitly having `%` at the end if just a number is specified.  Consider for v4 changing parsing for percent values s.t. unitless values range on [0, 1] and values with `%` range on [0, 100].  For now, just add a case for percent units to use `value` instead of `pfValue`.

* Add 3.2.12 to the release list in the docs

* Preparing to publish 3.2.12

* add required function to falseThread that is called if a layout.run() is called more than once in non-weaver set-up.

* Allow null values to be passed to `style.parse()`

Ref : Removing 'background-image' and adding 'background-color' instead cytoscape#2124

* Deprecate `cy.collection( val )` cytoscape#2126

* Revisions to the "who uses" list

* A `multiple:true` property that is not unitless does not have an accurate `strValue` representation:  The units are missing from each value.

Ref : cy.style().json() background-width/height misses "%" in value cytoscape#2121

* Add 3.2.13 to release list in the docs

* Preparing to publish 3.2.13

* `edge.controlPoints()` is `undefined` for loops

Ref cytoscape#2139

* `edge.controlPoints()` is undefined for edges between a parent node and one of its descendants.  While these edges aren't strictly loops, they are displayed in a similar way to loops using two beziers.

Ref : `edge.controlPoints()` is `undefined` for loops cytoscape#2139

* Add 3.2.14 to the release list in the docs

* Preparing to publish 3.2.14

* Add explicit stylesheet transition animation tests

Ref cytoscape#2148

* Remove warning in style tests

* Tests for `transition-property` requires a comma-separated list in 3.2

Revert "Remove warning in style tests"

8afe1ee

* When in an active touch cycle in the renderer and neither panning nor node-dragging is active, remove the active background indicator.

Ref : The active background indicator remains when making a non-pan touch swipe cytoscape#2156

* End the renderer's  touch gesture cycle only if all fingers are removed from the screen.

Ref : A touch gesture cycle can be cut short cytoscape#2157

* Add 3.2.15 to release list

* Preparing to publish 3.2.15

* Ignore label value processing if the raw value is empty.

Ref : Removing text from edge's label keeps background visible cytoscape#2164

* Fix `source-text-rotation` and `target-text-rotation` not being used for source and target labels.  Previously, `text-rotation` was erroneously applied to the display of source and target labels, but the correct properties were used for bounds calculations.

Ref : Source and target labels use `text-rotation` rather than `source-text-rotation` and `target-text-rotation` for display cytoscape#2167

* Update release list in the docs with 3.2.16

* Preparing to publish 3.2.16

* Remove the console.logs used for debugging and forgotton

* Added a note about upgrade
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