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Add clustering algorithms #1963

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maxkfranz opened this issue Sep 5, 2017 · 1 comment
Closed
10 tasks done

Add clustering algorithms #1963

maxkfranz opened this issue Sep 5, 2017 · 1 comment
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3.3.0

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maxkfranz commented Sep 5, 2017 •
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Merge the following (unpublished to npm) extensions to the main lib:

For each:

  • Review code
    • High-level review for more obvious issues
    • In-depth review
  • Merge source
  • Merge tests
  • Port readme docs to main lib docs
@maxkfranz maxkfranz added this to the 3.3.0 milestone Sep 5, 2017
@maxkfranz maxkfranz reopened this Nov 10, 2017
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maxkfranz commented Nov 10, 2017 •
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Fuzzy c-means has an issue that is erratic: https://travis-ci.org/cytoscape/cytoscape.js/jobs/300396692

maxkfranz added a commit that referenced this issue Apr 16, 2018
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For k-means and fuzzy c-means, add support for sensitivityThreshold #…
ddb5a03 
…1963
maxkfranz added a commit that referenced this issue Apr 16, 2018
@maxkfranz
Rework the fuzzy c-means test that sometimes fails #1963
bd2db11 
- Increase the number of tries to increase reproducibility.
- Simplify the clusters comparison to a human-readable string comparison.
- Increasing the distance between the expected clusters seems to make the issue not reproducible.  Perhaps it's just much less likely.
- The issue seems to stem from cases where the centroids are much different from where the test implicitly expects.  This happens rarely.
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