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Who uses Cytoscape.js? #914

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maxkfranz opened this Issue Apr 24, 2015 · 53 comments

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maxkfranz commented Apr 24, 2015

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site
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danieljue commented Apr 28, 2015

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maxkfranz commented Apr 28, 2015

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maxkfranz commented Apr 28, 2015

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maxkfranz Apr 28, 2015

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Later:

GeneMANIA
http://genemania.org

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maxkfranz commented Apr 28, 2015

Later:

GeneMANIA
http://genemania.org

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keiono Apr 28, 2015

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Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

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keiono commented Apr 28, 2015

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

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ktei commented May 10, 2015

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robmosca commented May 12, 2015

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EDreven Jun 4, 2015

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

EDreven commented Jun 4, 2015

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

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keiono Jun 4, 2015

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It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

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keiono commented Jun 4, 2015

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

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maxkfranz commented Dec 11, 2015

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maxruby Dec 12, 2015

Visual Interaction GmbH: http://www.mygaze.com

maxruby commented Dec 12, 2015

Visual Interaction GmbH: http://www.mygaze.com

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patbuergin Jan 9, 2016

GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

patbuergin commented Jan 9, 2016

GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

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mabossert Jan 19, 2016

I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

mabossert commented Jan 19, 2016

I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

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danmaclean Jan 26, 2016

PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

danmaclean commented Jan 26, 2016

PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

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YMA-MDL Feb 12, 2016

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

YMA-MDL commented Feb 12, 2016

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

maxkfranz added a commit that referenced this issue Feb 25, 2016

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AoDev Mar 19, 2016

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

AoDev commented Mar 19, 2016

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

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michalhabala Apr 7, 2016

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Graphlytic - Graph BI platform
http://graphlytic.sk/

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michalhabala commented Apr 7, 2016

Graphlytic - Graph BI platform
http://graphlytic.sk/

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jfreyreg Apr 25, 2016

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

jfreyreg commented Apr 25, 2016

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

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narseo Jun 8, 2016

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

narseo commented Jun 8, 2016

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

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Malalama Jun 9, 2016

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

Malalama commented Jun 9, 2016

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

@maxkfranz maxkfranz self-assigned this Jun 10, 2016

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kuzinmv Jun 12, 2016

Organisation name: private project(Road traffic modeling)
Link to organisation site: https://avenue-2p0.herokuapp.com

test account credentials
login: test@user.com
pass: 123

example: https://avenue-2p0.herokuapp.com/app/5759b77087e8a61b00650c97#

kuzinmv commented Jun 12, 2016

Organisation name: private project(Road traffic modeling)
Link to organisation site: https://avenue-2p0.herokuapp.com

test account credentials
login: test@user.com
pass: 123

example: https://avenue-2p0.herokuapp.com/app/5759b77087e8a61b00650c97#

@maxkfranz maxkfranz removed their assignment Jun 16, 2016

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tmmurali Jul 11, 2016

GraphSpace, a web-based system for storing, sharing, and visualizing graphs in order to foster collaborative research.

Site: www.graphspace.org
Code: https://github.com/Murali-group/GraphSpace

tmmurali commented Jul 11, 2016

GraphSpace, a web-based system for storing, sharing, and visualizing graphs in order to foster collaborative research.

Site: www.graphspace.org
Code: https://github.com/Murali-group/GraphSpace

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diegoalonso78 Jul 12, 2016

Thank you for adding APID.

I noticed that the link isn't working. Could you please link it to http://apid.dep.usal.es ?

Thanks in advance.

diegoalonso78 commented Jul 12, 2016

Thank you for adding APID.

I noticed that the link isn't working. Could you please link it to http://apid.dep.usal.es ?

Thanks in advance.

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BrettJSettle Sep 22, 2016

BS CytoGraph, a graph visualization and JS algorithm testing environment and sharing site.
Site: http://www.thesettleproject.com/graph

BrettJSettle commented Sep 22, 2016

BS CytoGraph, a graph visualization and JS algorithm testing environment and sharing site.
Site: http://www.thesettleproject.com/graph

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xmas Sep 30, 2016

We're using Cytoscape at rezza.io. Working great for interactive relational database modeling!

xmas commented Sep 30, 2016

We're using Cytoscape at rezza.io. Working great for interactive relational database modeling!

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mwang87 Feb 2, 2017

Visualization of structurally related compounds in Mass Spectrometry with Molecular Networks at GNPS at UCSD:

http://gnps.ucsd.edu/ProteoSAFe/result.jsp?view=network_displayer&componentindex=67&task=c95481f0c53d42e78a61bf899e9f9adb#%7B%7D

mwang87 commented Feb 2, 2017

Visualization of structurally related compounds in Mass Spectrometry with Molecular Networks at GNPS at UCSD:

http://gnps.ucsd.edu/ProteoSAFe/result.jsp?view=network_displayer&componentindex=67&task=c95481f0c53d42e78a61bf899e9f9adb#%7B%7D

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NicolasForget Mar 31, 2017

Hello,

I've read the LICENSE file, and I understood that I can use this library as long as I mention it.
But this is for using it in the development of a tool which will be sold to customers.
So I need to be hundred percent sure (by a feedback) that I can use it without trouble.
BTW it is for a team in SAP France : https://www.sap.com/france/index.html

Regards,

Nicolas Forget

NicolasForget commented Mar 31, 2017

Hello,

I've read the LICENSE file, and I understood that I can use this library as long as I mention it.
But this is for using it in the development of a tool which will be sold to customers.
So I need to be hundred percent sure (by a feedback) that I can use it without trouble.
BTW it is for a team in SAP France : https://www.sap.com/france/index.html

Regards,

Nicolas Forget

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maxkfranz Mar 31, 2017

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@NicolasForget As mentioned in the docs and readme, the project is MIT licensed and that's a very permissive license. I have no legal expertise, but it is my understanding that most commercial organisations are able to use MIT licensed OSS. There are several companies already using Cytoscape.js in commercial projects, but I can't speak to the particulars of your project and you should consult your company's lawyers if you have any concerns.

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maxkfranz commented Mar 31, 2017

@NicolasForget As mentioned in the docs and readme, the project is MIT licensed and that's a very permissive license. I have no legal expertise, but it is my understanding that most commercial organisations are able to use MIT licensed OSS. There are several companies already using Cytoscape.js in commercial projects, but I can't speak to the particulars of your project and you should consult your company's lawyers if you have any concerns.

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MartinSchmid2409 Apr 12, 2017

Cytoscape.js is used to visualize the history of Heavy Metal and its numerous genres!

--- The Interactive Metal Genres Graph ---
--- https://www.boundbymetal.com ---

MartinSchmid2409 commented Apr 12, 2017

Cytoscape.js is used to visualize the history of Heavy Metal and its numerous genres!

--- The Interactive Metal Genres Graph ---
--- https://www.boundbymetal.com ---

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chrisdoman commented May 2, 2017

https://www.threatcrowd.org uses cytoscape js

@maxkfranz maxkfranz removed their assignment May 23, 2017

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Insulince May 25, 2017

We (younivise) are using Cytoscape in our Hackathon winning project, Virtual Advisor. See http://younivise.com/ for further details and a video demo (currently no live product).

Insulince commented May 25, 2017

We (younivise) are using Cytoscape in our Hackathon winning project, Virtual Advisor. See http://younivise.com/ for further details and a video demo (currently no live product).

@maxkfranz maxkfranz self-assigned this May 25, 2017

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maxkfranz added a commit that referenced this issue Jun 19, 2017

maxkfranz added a commit that referenced this issue Jun 19, 2017

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KonradHoeffner commented Jun 21, 2017

http://www.snik.eu/graph/ visualizes an ontology of Information Management in hospitals for the SNIK research project at the Institute for Medical Informatics, Statistics and Epidemiology (IMISE).

@maxkfranz maxkfranz self-assigned this Jun 26, 2017

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gabor-kovacs Aug 2, 2017

A visual decomposition of Japanese kanji characters.

http://thekanjimap.com/

gabor-kovacs commented Aug 2, 2017

A visual decomposition of Japanese kanji characters.

http://thekanjimap.com/

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anault Aug 9, 2017

Classcraft (school gamification)

Interactive map where students progress through their class content just like as if they were on a quest.

Quest map

anault commented Aug 9, 2017

Classcraft (school gamification)

Interactive map where students progress through their class content just like as if they were on a quest.

Quest map

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gsoules Sep 29, 2017

The Southwest Harbor Public Library in Maine is using Cytoscape in its Digital Archive via the AvantRelationships plugin we developed for Omeka. The plugin uses Cytoscape to display a visualization of the real world relationships between people, places, and things.

gsoules commented Sep 29, 2017

The Southwest Harbor Public Library in Maine is using Cytoscape in its Digital Archive via the AvantRelationships plugin we developed for Omeka. The plugin uses Cytoscape to display a visualization of the real world relationships between people, places, and things.

@maxkfranz maxkfranz self-assigned this Oct 2, 2017

@maxkfranz maxkfranz removed their assignment Oct 10, 2017

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mnelson4 Dec 9, 2017

Just made a basic WordPress plugin that shows this in-use. https://github.com/mnelson4/cytoscape-demo I'm hoping to use this to basically graph a family tree

mnelson4 commented Dec 9, 2017

Just made a basic WordPress plugin that shows this in-use. https://github.com/mnelson4/cytoscape-demo I'm hoping to use this to basically graph a family tree

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fedarko Mar 15, 2018

MetagenomeScope (project homepage) uses Cytoscape.js to display sequence assembly graphs.

This project is part of the University of Maryland's Center for Bioinformatics and Computational Biology.

fedarko commented Mar 15, 2018

MetagenomeScope (project homepage) uses Cytoscape.js to display sequence assembly graphs.

This project is part of the University of Maryland's Center for Bioinformatics and Computational Biology.

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0xdabbad00 Mar 28, 2018

CloudMapper: An open-source tool for visualizing the network connections in AWS (Amazon Web Services). Demo

demo_layout

0xdabbad00 commented Mar 28, 2018

CloudMapper: An open-source tool for visualizing the network connections in AWS (Amazon Web Services). Demo

demo_layout

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sarora2073 Apr 18, 2018

https://BlueSailCRM.com - we use cytoscape within our marketing automation engine.

sarora2073 commented Apr 18, 2018

https://BlueSailCRM.com - we use cytoscape within our marketing automation engine.

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d47853 Jun 7, 2018

GCHQ uses Cytoscape.js in their UI for Gaffer, an open source graph database.

d47853 commented Jun 7, 2018

GCHQ uses Cytoscape.js in their UI for Gaffer, an open source graph database.

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