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Who uses Cytoscape.js? #914

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maxkfranz opened this issue Apr 24, 2015 · 125 comments
Open

Who uses Cytoscape.js? #914

maxkfranz opened this issue Apr 24, 2015 · 125 comments
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@maxkfranz
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It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site
@danieljue
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DARPA XDATA / Sotera Defense Solutions, Inc.
http://sotera.github.io/graphene/
http://www.darpa.mil/opencatalog/xdata.html

@maxkfranz
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Pathway Commons
http://www.pathwaycommons.org

@maxkfranz
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NDEx
http://home.ndexbio.org/

@maxkfranz
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Later:

GeneMANIA
http://genemania.org

@keiono
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keiono commented Apr 28, 2015

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

@ktei
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ktei commented May 10, 2015

InfoTrack
http://www.infotrack.com.au/

@starkfree
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@ghost
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ghost commented May 12, 2015

dSysMap
http://dsysmap.irbbarcelona.org

@EDreven
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EDreven commented Jun 4, 2015

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

@keiono
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keiono commented Jun 4, 2015

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

@maxkfranz
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Intermine : University of Cambridge : http://intermine.org/

https://twitter.com/intermineorg/status/664410088623489024

@maxkfranz
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@maxruby
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maxruby commented Dec 12, 2015

Visual Interaction GmbH: http://www.mygaze.com

@patbuergin-zz
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GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

@mabossert
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I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

@danmaclean
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PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

@YMA-MDL
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YMA-MDL commented Feb 12, 2016

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

@maxkfranz
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maxkfranz added a commit that referenced this issue Feb 25, 2016
@AoDev
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AoDev commented Mar 19, 2016

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

@michalhabala
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Graphlytic - Graph BI platform
http://graphlytic.sk/

@jfreyreg
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Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

@diegoalonso78
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APID - Agile Protein Interactomes DataServer
http://apid.dep.usal.es
Example: http://cicblade.dep.usal.es:8080/APID/InteractionsNetworkApp.action?protein=P26951

@narseo
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narseo commented Jun 8, 2016

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

@Malalama
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Malalama commented Jun 9, 2016

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

@maxkfranz maxkfranz self-assigned this Jun 10, 2016
maxkfranz added a commit that referenced this issue Dec 6, 2021
@Hoogkamer
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https://termboard.com/
Generate and document your Data models, Data lineage, Mind maps, Networks, Processes, Workflows.

image

@bradproctor
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bradproctor commented May 5, 2022

ThreatConnect uses Cytoscape.js to allow intelligence analysts to visualize relationships between threat actors, campaigns, incidents and other IOCs.

Cytoscape in ThreatConnect

maxkfranz added a commit that referenced this issue Jun 20, 2022
maxkfranz added a commit that referenced this issue Jun 20, 2022
@maxkfranz maxkfranz removed their assignment Jun 30, 2022
@lkarlslund
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My project Adalanche uses Cytoscape.js for visualizing attack paths in Active Directory (and other) systems.

https://github.com/lkarlslund/Adalanche

@sveinp
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sveinp commented Aug 31, 2022

T-rank uses Cytoscape for visualizing shareholder networks.

image

@anwaarulmustafa
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Organization Name: DGB Technologies
Website Link: https://www.dgbtek.com

@marlondumas
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Organization Name: Apromore
Website Link: https://apromore.com/
Example visualization: https://documentation.apromore.org/_images/220.png

@atakanahmetce
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Organization Name: CanSyL
Website Link: https://crossbar.kansil.org/
Example: https://crossbar.kansil.org/covid19_simplified.php

maxkfranz added a commit that referenced this issue Jan 11, 2023
maxkfranz added a commit that referenced this issue Jan 11, 2023
@maxkfranz maxkfranz pinned this issue Apr 18, 2023
@mreichhoff
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HanziGraph (an educational tool for learners of Chinese and Japanese) uses CytoscapeJS. It's been recommended in a few places; also see the demo.

Website Link: https://hanzigraph.com
Repo: https://github.com/mreichhoff/HanziGraph

Thanks for the great library!

@fsmunoz
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fsmunoz commented May 14, 2023

The Budō Lineage Tree is a project I've just announced, and whose user-facing component is entirely based on Cytoscape.js . It parses a YAML based database (open to community input) of martial arts practitioners and their teachers and styles, and create a CYJS file, which is then visualised through the site using Cytoscape.js

image

Website: https://budotree.judoc.org/
Organisation: Frederico Muñoz, The Judo Documentation Project

@leecalcote
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Organization: Layer5
Project: Meshery

Thanks for all the work you do, @maxkfranz

maxkfranz added a commit that referenced this issue Sep 26, 2023
Add Layer5 & Meshery

Ref: Who uses Cytoscape.js? #914
@paulvb
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paulvb commented Nov 19, 2023

Organization: Companytracker
Website: https://www.companytracker.be/en

We use it to visualise relations between belgian businesses.

Thanks a lot for the great library, it covered everything that we needed!

companytracker-graph

maxkfranz added a commit that referenced this issue Nov 23, 2023
@artturimatias
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Organization: Open Science Centre of University of Jyväskylä
Website: https://osc.jyu.fi/en
KuKaKo is a visual, open source tool for communicating (sometimes messy) connections between people and things in community. Cytoscape.js is used for rendering organisation graph.
github: https://github.com/OSC-JYU/KuKaKo
Screenshot from 2023-09-18 16-14-22

Thanks!

maxkfranz added a commit that referenced this issue Dec 1, 2023
@sidharthv96
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Organization: Mermaid-JS
Project: Mermaid

We currently use Cytoscape for Mindmaps, but considering adopting it as the default layout engine to replace dagre.

@ExtReMLapin
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Arcade DB uses it for it's graph database

@ShriramVaradachari
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It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site

Organization - Stradegi Solutions
Link to website - www.nflows.com

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