Who uses Cytoscape.js?

[maxkfranz]

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

• Organisation name
• Link to organisation site

[danieljue]

DARPA XDATA / Sotera Defense Solutions, Inc.
http://sotera.github.io/graphene/
http://www.darpa.mil/opencatalog/xdata.html

[maxkfranz]

Pathway Commons
http://www.pathwaycommons.org

[maxkfranz]

NDEx
http://home.ndexbio.org/

[maxkfranz]

Later:

GeneMANIA
http://genemania.org

[keiono]

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

[ktei]

InfoTrack
http://www.infotrack.com.au/

[starkfree]

BioGRID
http://thebiogrid.org/
Example: http://thebiogrid.org/33257/network/saccharomyces-cerevisiae/msb2.html

dSysMap
http://dsysmap.irbbarcelona.org

[EDreven]

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

[keiono]

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

[maxkfranz]

Intermine : University of Cambridge : http://intermine.org/

https://twitter.com/intermineorg/status/664410088623489024

[maxkfranz]

ARAS PLM : http://www.aras.com/

https://twitter.com/yoannmaingon/status/658042200165588992

[maxruby]

Visual Interaction GmbH: http://www.mygaze.com