Who uses Cytoscape.js? #914

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maxkfranz opened this Issue Apr 24, 2015 · 35 comments

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@maxkfranz
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It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site
@maxkfranz
Member
@maxkfranz
Member

Later:

GeneMANIA
http://genemania.org

@keiono
Member
keiono commented Apr 28, 2015

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

@ktei
Contributor
ktei commented May 10, 2015
@robmosca
Contributor
@EDreven
EDreven commented Jun 4, 2015

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

@keiono
Member
keiono commented Jun 4, 2015

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

@maxruby
maxruby commented Dec 12, 2015

Visual Interaction GmbH: http://www.mygaze.com

@patbuergin

GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

@mabossert

I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

@danmaclean

PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

@YMA-MDL
YMA-MDL commented Feb 12, 2016

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

@maxkfranz maxkfranz added a commit that referenced this issue Feb 25, 2016
@maxkfranz maxkfranz add used by #914 5523e43
@AoDev
AoDev commented Mar 19, 2016

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

@michalhabala
Contributor

Graphlytic - Graph BI platform
http://graphlytic.sk/

@jfreyreg

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

@narseo
narseo commented Jun 8, 2016

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

@Malalama
Malalama commented Jun 9, 2016 edited

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

@maxkfranz maxkfranz self-assigned this Jun 10, 2016
@kuzinmv
kuzinmv commented Jun 12, 2016

Organisation name: private project(Road traffic modeling)
Link to organisation site: https://avenue-2p0.herokuapp.com

test account credentials
login: test@user.com
pass: 123

example: https://avenue-2p0.herokuapp.com/app/5759b77087e8a61b00650c97#

@maxkfranz maxkfranz removed their assignment Jun 16, 2016
@tmmurali

GraphSpace, a web-based system for storing, sharing, and visualizing graphs in order to foster collaborative research.

Site: www.graphspace.org
Code: https://github.com/Murali-group/GraphSpace

@diegoalonso78

Thank you for adding APID.

I noticed that the link isn't working. Could you please link it to http://apid.dep.usal.es ?

Thanks in advance.

@BrettJSettle

BS CytoGraph, a graph visualization and JS algorithm testing environment and sharing site.
Site: www.brettjsettle.site/graph

@xmas
xmas commented Sep 30, 2016 edited

We're using Cytoscape at rezza.io. Working great for interactive relational database modeling!

@dfcarpenter

We are using cytoscape all over the place. Great work.
Stringify
stringify.com

@Tadasu85
Tadasu85 commented Nov 5, 2016

Using cytoscape to develop SteemStars which is a game along side steemit.com

@maxkfranz maxkfranz self-assigned this Nov 9, 2016
@maxkfranz maxkfranz removed their assignment Nov 23, 2016
@Tadasu85

Steemstars now also has a live version running here https://steemstars.herokuapp.com/ thank you for adding this.

@maxkfranz maxkfranz added a commit that referenced this issue Jan 4, 2017
@maxkfranz maxkfranz adds link to steemstars #914 a1b0175
@maxkfranz maxkfranz added a commit that referenced this issue Jan 4, 2017
@maxkfranz maxkfranz adds link to steemstars #914 7489b8c
@maxkfranz maxkfranz added a commit that referenced this issue Jan 4, 2017
@maxkfranz maxkfranz adds link to steemstars #914 5895adc
@Sigfried

I'm starting to use it for an ambitious, open-source, medical research project I'm doing for http://www.ohdsi.org/.

@maxkfranz: If you have a chance, I could use a little help understanding bezier curves: http://stackoverflow.com/questions/41638266/how-to-use-bezier-curves-in-cytoscape-js.

Cytoscape.js is amazing. Thanks!

@maxkfranz maxkfranz self-assigned this Jan 14, 2017
@maxkfranz maxkfranz added a commit that referenced this issue Jan 16, 2017
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@maxkfranz maxkfranz added a commit that referenced this issue Jan 16, 2017
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@maxkfranz maxkfranz added a commit that referenced this issue Jan 16, 2017
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@maxkfranz maxkfranz removed their assignment Jan 16, 2017
@SergioRonchi

How-4 an Organization Network Anaylisis tool

www.activevalue.eu
www.how-4.com

@maxkfranz maxkfranz self-assigned this Jan 27, 2017
@mwang87
mwang87 commented Feb 2, 2017 edited

Visualization of structurally related compounds in Mass Spectrometry with Molecular Networks at GNPS at UCSD:

http://gnps.ucsd.edu/ProteoSAFe/result.jsp?view=network_displayer&componentindex=67&task=c95481f0c53d42e78a61bf899e9f9adb#%7B%7D

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