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FROM discoenv/rstudio-nginx:3.5.0
RUN apt-get update && apt-get install -y zlib1g-dev libxml2-dev
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("devtools"); biocLite("pachterlab/sleuth");'
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("edgeR");'
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("annotate"); biocLite("genefilter");'
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("DESeq2");'
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("ballgown");'
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