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FROM jupyter/datascience-notebook
COPY jupyter_notebook_config.json /opt/conda/etc/jupyter/jupyter_notebook_config.json
USER root
# Install the icommands, curl, and wget
RUN apt-get update \
&& apt-get install -y lsb wget gnupg apt-transport-https python3.6 python-requests curl \
&& apt-get clean \
&& rm -rf /usr/lib/apt/lists/* \
&& fix-permissions $CONDA_DIR
RUN wget -qO - https://packages.irods.org/irods-signing-key.asc | apt-key add - \
&& echo "deb [arch=amd64] https://packages.irods.org/apt/ xenial main" > /etc/apt/sources.list.d/renci-irods.list \
&& apt-get update \
&& apt-get install -y irods-icommands \
&& apt-get clean \
&& rm -rf /usr/lib/apt/lists/* \
&& fix-permissions $CONDA_DIR
USER jovyan
# install foundational jupyter lab
RUN conda update -n base conda \
&& conda install jupyterlab=0.35.4 \
&& conda clean -tipsy \
&& fix-permissions $CONDA_DIR
# install jupyter hub and extra doodads
RUN jupyter lab --version \
&& jupyter labextension install @jupyterlab/hub-extension@0.12.0 \
@jupyter-widgets/jupyterlab-manager@0.38.1 \
jupyterlab_bokeh@0.6.3
# Install the irods plugin for jupyter lab
RUN pip install jupyterlab_irods==2.0.1 \
&& jupyter serverextension enable --py jupyterlab_irods \
&& jupyter labextension install ijab@2.0.1
ENTRYPOINT ["jupyter"]
CMD ["lab", "--no-browser"]
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