From be76e1b61bcdb060df8381f4c40df98326bc86b8 Mon Sep 17 00:00:00 2001 From: jenna-tomkinson Date: Mon, 28 Nov 2022 12:50:06 -0700 Subject: [PATCH] edited documentation --- 4_processing_features/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/4_processing_features/README.md b/4_processing_features/README.md index 589a13a..0caf7fa 100644 --- a/4_processing_features/README.md +++ b/4_processing_features/README.md @@ -31,7 +31,7 @@ conda env create -f 4.processing_features.yml ### Step 2a: Set Up Paths -Within the [extract_single_cell_features.ipynb](4_processing_features/extract_single_cell_features.ipynb) notebook, change the paths to reflect the local paths or names for your machine for the various parameters (e.g. CellProfiler directory, output directory, path to sqlite file, etc.) +Within the [extract_single_cell_features.ipynb](4_processing_features/extract_single_cell_features.ipynb) notebook, you can chnage the paths to reflect the local paths or names for your machine (**IF** you changed anything from the original pipeline)for the various parameters (e.g. CellProfiler directory, output directory, path to sqlite file, etc.) ### Step 2b: Run Extract Single Cell Features