Scripts to reproduce results from Riback, Katanski et al. Cell 2017
Mathematica Python R Makefile
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README.md

README.md

Overview

The scripts in this repository were used to create the figures in Riback, Katanski et al. Cell 2017

The src (source code) directory contains two directories:

  1. evolution contains alignment and sequence-analysis scripts, mostly in Python and some R.
  2. biophysics contains circular dichroism, dynamic light scattering, and small-angle X-ray scattering scripts in Mathematica format.

The data directory contains protein-sequence files used in the evolutionary analysis.

README files are contained in each directory further describing the scripts.

Citation

Riback JA, Katanski CD, Kear-Scott JL, Pilipenko EV, Rojek AE, Sosnick TR, and Drummond DA. Stress-triggered phase separation is an adaptive, evolutionarily tuned response. Cell 168 (6):1028–1040 (2017).