From 57b2d860afdedb0c42cdd1fa326b797c33dd1982 Mon Sep 17 00:00:00 2001 From: daler Date: Wed, 15 Jun 2011 16:58:07 -0400 Subject: [PATCH] license to GPLv2 like bedtools --- LICENSE.txt | 35 ++++++++++++++--------------------- README.rst | 9 ++++++++- docs/source/index.rst | 11 +++++++---- 3 files changed, 29 insertions(+), 26 deletions(-) diff --git a/LICENSE.txt b/LICENSE.txt index efcdffc6..16c30994 100644 --- a/LICENSE.txt +++ b/LICENSE.txt @@ -1,26 +1,19 @@ -Wrapper for Aaron Quinlan's BEDtools, plus other useful methods for working with BED files +Wrapper for Aaron Quinlan's BEDtools, plus other useful methods for working +with BED, BAM, GFF, and VCF files -Copyright (c) 2010, Ryan Dale +Copyright (c) 2010,2011 Ryan Dale All rights reserved. +This program is free software; you can redistribute it and/or +modify it under the terms of the GNU General Public License +as published by the Free Software Foundation; either version 2 +of the License, or (at your option) any later version. -Redistribution and use in source and binary forms, with or without modification, -are permitted provided that the following conditions are met: +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" -AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, -THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE -ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE -FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES -(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; -LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND -ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT -(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE -OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +You should have received a copy of the GNU General Public License along +with this program; if not, write to the Free Software Foundation, Inc., 51 +Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. diff --git a/README.rst b/README.rst index 3a26a0f5..5ab48063 100644 --- a/README.rst +++ b/README.rst @@ -1,6 +1,6 @@ Overview -------- -pybedtools is a Python wrapper for Aaron Quinlan's BEDtools and is +`pybedtools` is a Python wrapper for Aaron Quinlan's BEDtools and is designed to leverage the "genome algebra" power of BEDtools from within Python scripts. @@ -9,3 +9,10 @@ Python. See full online documentation, including installation instructions, at http://pybedtools.genomicnorth.com. + +Created by Ryan Dale 2010 + +Copyright 2010,2011 Ryan Dale, all rights reserved. + +`pybedtools` is released under the GPLv2 license; see LICENSE.txt for more +info. diff --git a/docs/source/index.rst b/docs/source/index.rst index 94a20975..560ea0a9 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -14,10 +14,13 @@ Welcome to pybedtools's documentation! mind when assesing whether to use this package in production code. The documentation is separated into 4 main parts, depending on the depth you'd -like to cover. Lazy, or just want to jump in? Check out :ref:`3examples` to -get a feel for the package. Want a guided tour? Give the :ref:`tutorial` a -shot. More advanced features are described in the :ref:`topical` section. Finally, -doctested module documentation can be found in :ref:`autodoc`. +like to cover: + +* Lazy, or just want to jump in? Check out :ref:`3examples` to + get a feel for the package. +* Want a guided tour? Give the :ref:`tutorial` a shot. +* More advanced features are described in the :ref:`topical` section. +* Finally, doctested module documentation can be found in :ref:`autodoc`. Contents: ---------