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Commits on Aug 3, 2016
  1. make pandas fully optional

    committed Aug 3, 2016
  2. rm py3.3 from build matrix

    committed Aug 3, 2016
  3. rm test-setup.sh

    committed Aug 3, 2016
  4. add reqs files

    committed Aug 3, 2016
Commits on Aug 2, 2016
  1. add six (fix #184)

    committed Aug 2, 2016
Commits on Jul 15, 2016
  1. Merge pull request #182 from mmendez12/mmendez12-fix-intron

    Fix intron creation from gff file
    committed on GitHub Jul 15, 2016
  2. Fix intron creation from gff file

    exon_iter actually iterate through genes and gene_iter iterates through exons. It should be the opposite.
    This fix simply swap the filter expression
    mmendez12 committed on GitHub Jul 15, 2016
Commits on Jul 14, 2016
  1. changelog and version bump

    committed Jul 14, 2016
Commits on Jul 1, 2016
  1. Merge pull request #179 from PanosFirmpas/patch-1

    Dont raise error if len(_names) < self.field_count()
    committed on GitHub Jul 1, 2016
  2. Update test1.py

    Changed the test for .to_dataframe() to expect a warning instead of an Error.
    
    The new test was made according to this:
    https://docs.python.org/2/library/warnings.html
    
    It expects a single UserWarning that starts  with "Default names for filetype"
    PanosFirmpas committed on GitHub Jul 1, 2016
  3. Update bedtool.py

    move the "_names = None" line below the warning so that the warning string gets formatted properly
    PanosFirmpas committed on GitHub Jul 1, 2016
  4. Dont raise error if len(_names) < self.field_count()

    Hi,
    
    I run into this error all the time when converting to dataframe.
    Since pandas is more than happy to deal with names=None, I find raising an error here quite unnecessary.
    
    I changed the error to a warning, and let it pass _names=None when the default names don't fit.
    PanosFirmpas committed on GitHub Jul 1, 2016
Commits on May 24, 2016
  1. add info on errno 32

    committed May 24, 2016
Commits on May 20, 2016
  1. Merge pull request #173 from eco32i/master

    Fixes the issue with multiprocessing in bedtool.randomstats on python 3
    committed May 20, 2016
Commits on May 19, 2016
Commits on Apr 21, 2016
Commits on Apr 16, 2016
  1. fix test for py3

    committed Apr 16, 2016
  2. fix test for py3

    committed Apr 16, 2016
  3. fix #169

    (keep header when sorting in bgzip())
    committed Apr 16, 2016
  4. fix #168 for py3

    committed Apr 16, 2016
  5. fix #168

    committed Apr 16, 2016
Commits on Mar 16, 2016
  1. add test for #164

    committed Mar 16, 2016
  2. add 164.gtf test file

    committed Mar 16, 2016
Commits on Mar 11, 2016
  1. changelog and version bump

    committed Mar 11, 2016
  2. add featurefuncs.UniqueID class

    committed Mar 11, 2016