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Commits on Apr 15, 2015
  1. fix #132 (see that issue for details)

    authored
Commits on Mar 13, 2015
  1. add BedTool.from_dataframe

    authored
Commits on Feb 22, 2015
Commits on Feb 5, 2015
Commits on Jan 27, 2015
  1. trigger a travis-ci build

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  2. pep8

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Commits on Jan 14, 2015
  1. docs and update doctests

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    fixes #127
Commits on Jan 2, 2015
Commits on Dec 11, 2014
  1. changes and bump version

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Commits on Dec 8, 2014
Commits on Dec 7, 2014
  1. Merge pull request #124 from rbeagrie/master

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    Don't assume bgzip is on path when tabix is installed.
Commits on Dec 6, 2014
  1. @rbeagrie
  2. @rbeagrie

    Allow bgzip path to be set independently of tabix path.

    rbeagrie authored
    Also, when checking for bgzip, call it with the -h option
    so that it doesn't hang waiting for input on stdin.
Commits on Dec 3, 2014
  1. @rbeagrie

    Don't assume bgzip is on path when tabix is installed.

    rbeagrie authored
    I encountered a bug where pybedtools gives an error message
    about /tmp/something.gz not existing when trying to tabix
    a bed file. This turned out to be because bgzip was missing
    from the path (but tabix was present). This checks for both
    binaries separately, and results in a more helpful error
    message.
Commits on Nov 28, 2014
  1. fix #123

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Commits on Oct 22, 2014
  1. Raise a ValueError in to_dataframe() file's fields > default fields

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    previously, to_dataframe() on a  GFF file with counts appended as a 10th
    column would only pass the 9 field names to pandas.read_table, which
    would see 10 fields in the file and assume the chrom column was the
    index.
Commits on Oct 10, 2014
Commits on Oct 8, 2014
  1. version bump

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  2. Merge pull request #117 from gpratt/master

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    Fix for leaky len call
Commits on Oct 7, 2014
  1. updated length test to be proper test instead of something that needs…

    gpratt authored
    … to be checked manually.
  2. fixed open file handle issue with len calls

    gpratt authored
Commits on Sep 25, 2014
  1. add hg38 to chromsizes

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  2. wrap fisher

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  3. use bedtools v2.21.0 for testing

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Commits on Sep 2, 2014
Commits on Aug 27, 2014
  1. travis-ci: install pandas

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Commits on Jul 30, 2014
  1. fix extend_fields and test

    authored
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