MEA multilevel Bayesian HMM code

Analysis code for running multilevel Bayesian HMMs on multi-electrode array data.

A Kirchherr, SM Moraga, G Coude, M Bimbi, PF Ferrari, E Aarts, JJ Bonaiuto
Bayesian multilevel hidden Markov models identify stable state dynamics in longitudinal recordings from macaque primary motor cortex
European Journal of Neuroscience 2023, https://onlinelibrary.wiley.com/doi/10.1111/ejn.16065

Requirements

• R
• mHMMBayes (developer version): https://github.com/emmekeaarts/mHMMbayes
• raincloud plots: https://github.com/RainCloudPlots/RainCloudPlots