Example data to be processed with the md-dmri framework
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README.md

README.md

Multidimensional diffusion MRI data

This repository contains example data that can be processed with the MD-dMRI framework. The data was acquired on a Bruker microimaging system using tubes with liquid crystals as described in Topgaard 2016 and Martins 2016. The following example folders are included:

How to start

Run setup_paths.m in the root folder to put files in the Matlab path. Run step1_recon_data.m and step2_run_analysis.m in the example folders above to process the data. View the raw or processed data with the graphical user interface included in the MD-dMRI framework. The interface is started by typing mgui in the Matlab command window.