TIL

Today I Learned

• TILs: 21
• Topics: 10

Alfred

• custom_search Useful custom search engines for Alfred (2020-05-22)

bash

• download_if Download file if it is not present (2020-06-16)
• draw_a_box Create boxed text using a bash alias (2020-05-22)
• set_of_commands Output multiple commands as a single stream (2020-05-22)
• split_bed Split a bed file by size and on chromosomes (2020-08-12)

docker

• run_alias Docker alias for quickly running images (2020-05-22)

github

• build-and-pub-docker Build and publish a docker container using GitHub Actions (2020-05-22)

Nextflow

• groupKey Use the groupKey operator to prevent blocks and improve caching (2020-05-22)
• sort_collect_file Sort lines in a file assembled using collectFile with a closure (2020-05-22)

Python

• lru_cache memoization using lru-cache (2020-05-22)
• parallel_downloads Parallel downloads with progress bars using urlretrieve (2020-05-22)
• pipreqs Managing Python requirements.txt (2020-05-22)

R

• gsheet_preview Open dataset in google sheets (2020-05-22)
• operators R operators (|| vs |, && vs &) (2020-05-22)
• row_iterator Iterate over a set of rows in rows R (2020-05-22)
• vectorize_list Set vectors from plain text lists (2020-06-06)

slurm

• backdoor-node Run a 'backdoor' interactive node (2020-05-22)
• job-summary Dump metrics for all slurm jobs (2020-05-22)

SQL

• COALESCE Take the first NON-NULL value from a list of values (2020-05-22)
• FIND_IN_SET Find an element in a delimited list (2020-05-22)

VCF

• calculate_het_rate Calculate the heterozygosity rate at per-site from a VCF (2020-06-06)