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Code for separating reads from mixed species RNA-seq into separate species (genomespecificmap_s3.py) and other code used in the pipeline of the paper http://www.breast-cancer-research.com/content/17/1/109.
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abovethreshold.py
argparse.py
dr_tools.py
genomespecificmap_s3.py
genomespecificmap_s3_manual.txt
instructions-rpkmforgenes.html
rpkmforgenes.py
tmm_norm.py
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