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- Perth, Australia
Finds taxonomic information for a given set of genbank identifiers, using the NCBI taxonomy database.
Takes gene family output information from MCL analysis and finds Ka/Ks statistics for each homologous group.
Forked from Adamtaranto/quick-ortho-fetch
Take an XML formatted multiblast result, extract genbank IDs for best x hits to each query and download a non-redundant list of matching seqs from ncbi.
A makefile that automates the process of phylogenetic tree construction of homologous sequences using meta-aligners and both ML and bayesian phylogenetic inference.
Project Makefiles and LaTeX/knitr documents for a university meta-genomics analysis assignment.
A series of biological data manipulation scripts intended for use on a POSIX type command line.