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  • TeX Updated Jun 13, 2019
  • Script to combine uc tables produced by dereplicating sequence reads and running unoise. This speeds up the process of creating a zOTU table using unoise.

    R 1 Updated May 7, 2019
  • Script to demultiplex illumina raw fastq files WITHOUT filtering

    R Updated Jan 27, 2019
  • These scripts allow ITSx to be used with fastq files, with minimal overhead.

    R 1 1 Updated Jul 31, 2018
  • ENMeval

    Forked from cran/ENMeval

    ❗️ This is a read-only mirror of the CRAN R package repository. ENMeval — Automated Runs and Evaluations of Ecological Niche Models

    R 2 Updated May 24, 2018
  • Simplifies output from genome/metagenome assembly by combining contigs with redundant regions

    R Updated May 1, 2018
  • Takes tiles generated by zoomify and re-constitutes them into full jpgs.

    R Updated Apr 25, 2018
  • A program to make de novo trees out of un-alignable sequence data.

    R Updated Jan 11, 2018
  • A Ghost Tree for Fungal ITS using the most recent versions of the UNITE and SILVA databases

    R Updated Nov 30, 2017
  • lulu

    Forked from tobiasgf/lulu

    r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

    Shell 4 GNU Lesser General Public License v3.0 Updated Nov 7, 2017
  • Batchfile Updated Sep 30, 2017
  • Analysis of housing cost in Boulder CO using data downloaded from Zillow.com

    R Updated May 16, 2017
  • A program to make fractals; see https://www.youtube.com/watch?v=kbKtFN71Lfs

    R Updated May 1, 2017
  • Some useful bash scripts for processing fasta files, especially from GenBank.

    Shell Updated Apr 24, 2017
  • A simulation written in R to determine the relationship between two methods of evaluating the coverage of microbial phototrophs in soil microcosm experiments.

    R Updated Apr 24, 2017
  • A program to extend contigs created from genome assembly. It will join contigs together, and also extend contigs using raw sequence data.

    C# Updated Apr 24, 2017
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