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Script to combine uc tables produced by dereplicating sequence reads and running unoise. This speeds up the process of creating a zOTU table using unoise.
Script to demultiplex illumina raw fastq files WITHOUT filtering
These scripts allow ITSx to be used with fastq files, with minimal overhead.
❗️ This is a read-only mirror of the CRAN R package repository. ENMeval — Automated Runs and Evaluations of Ecological Niche Models
Simplifies output from genome/metagenome assembly by combining contigs with redundant regions
Takes tiles generated by zoomify and re-constitutes them into full jpgs.
A program to make de novo trees out of un-alignable sequence data.
A Ghost Tree for Fungal ITS using the most recent versions of the UNITE and SILVA databases
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
Analysis of housing cost in Boulder CO using data downloaded from Zillow.com
A program to make fractals; see https://www.youtube.com/watch?v=kbKtFN71Lfs
Some useful bash scripts for processing fasta files, especially from GenBank.
A simulation written in R to determine the relationship between two methods of evaluating the coverage of microbial phototrophs in soil microcosm experiments.
A program to extend contigs created from genome assembly. It will join contigs together, and also extend contigs using raw sequence data.