sce <- to_SingleCellExperiment(adata)
-#> Warning: replacing previous import 'S4Arrays::makeNindexFromArrayViewport' by
-#> 'DelayedArray::makeNindexFromArrayViewport' when loading 'SummarizedExperiment'
seurat <- to_Seurat(adata)
-#> Loading required namespace: SeuratObject
-#> The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
-#> which was just loaded, will retire in October 2023.
-#> Please refer to R-spatial evolution reports for details, especially
-#> https://r-spatial.org/r/2023/05/15/evolution4.html.
-#> It may be desirable to make the sf package available;
-#> package maintainers should consider adding sf to Suggests:.
-#> The sp package is now running under evolution status 2
-#> (status 2 uses the sf package in place of rgdal)
#> Warning: Keys should be one or more alphanumeric characters followed by an
#> underscore, setting key from rna to rna_
#> Warning in matrix(data = as.numeric(x = x), ncol = nc): NAs introduced by
@@ -226,48 +215,39 @@ Session info#> tzcode source: system (glibc)
#>
#> attached base packages:
-#> [1] stats graphics grDevices utils datasets methods base
+#> [1] stats4 stats graphics grDevices utils datasets methods
+#> [8] base
#>
#> other attached packages:
-#> [1] anndataR_0.0.0.9000 BiocStyle_2.28.1
+#> [1] anndataR_0.0.0.9000 SingleCellExperiment_1.22.0
+#> [3] SummarizedExperiment_1.30.2 Biobase_2.60.0
+#> [5] GenomicRanges_1.52.0 GenomeInfoDb_1.36.3
+#> [7] IRanges_2.34.1 S4Vectors_0.38.1
+#> [9] BiocGenerics_0.46.0 MatrixGenerics_1.12.3
+#> [11] matrixStats_1.0.0 SeuratObject_4.1.3
+#> [13] sp_2.0-0 BiocStyle_2.28.1
#>
#> loaded via a namespace (and not attached):
-#> [1] SummarizedExperiment_1.30.2 xfun_0.40
-#> [3] bslib_0.5.1 rhdf5_2.44.0
-#> [5] Biobase_2.60.0 lattice_0.21-8
-#> [7] rhdf5filters_1.12.1 vctrs_0.6.3
-#> [9] tools_4.3.1 bitops_1.0-7
-#> [11] stats4_4.3.1 parallel_4.3.1
-#> [13] Matrix_1.5-4.1 desc_1.4.2
-#> [15] S4Vectors_0.38.1 lifecycle_1.0.3
-#> [17] GenomeInfoDbData_1.2.10 compiler_4.3.1
-#> [19] stringr_1.5.0 textshaping_0.3.6
-#> [21] codetools_0.2-19 SeuratObject_4.1.3
-#> [23] GenomeInfoDb_1.36.3 htmltools_0.5.6
-#> [25] sass_0.4.7 RCurl_1.98-1.12
-#> [27] yaml_2.3.7 pkgdown_2.0.7
-#> [29] crayon_1.5.2 jquerylib_0.1.4
-#> [31] SingleCellExperiment_1.22.0 cachem_1.0.8
-#> [33] DelayedArray_0.26.7 abind_1.4-5
-#> [35] parallelly_1.36.0 digest_0.6.33
-#> [37] stringi_1.7.12 future_1.33.0
-#> [39] purrr_1.0.2 bookdown_0.35
-#> [41] listenv_0.9.0 rprojroot_2.0.3
-#> [43] fastmap_1.1.1 grid_4.3.1
-#> [45] cli_3.6.1 magrittr_2.0.3
-#> [47] S4Arrays_1.0.6 future.apply_1.11.0
-#> [49] sp_2.0-0 rmarkdown_2.24
-#> [51] XVector_0.40.0 matrixStats_1.0.0
-#> [53] globals_0.16.2 progressr_0.14.0
-#> [55] ragg_1.2.5 memoise_2.0.1
-#> [57] evaluate_0.21 knitr_1.44
-#> [59] GenomicRanges_1.52.0 IRanges_2.34.1
-#> [61] rlang_1.1.1 Rcpp_1.0.11
-#> [63] glue_1.6.2 BiocManager_1.30.22
-#> [65] BiocGenerics_0.46.0 jsonlite_1.8.7
-#> [67] R6_2.5.1 Rhdf5lib_1.22.1
-#> [69] MatrixGenerics_1.12.3 systemfonts_1.0.4
-#> [71] fs_1.6.3 zlibbioc_1.46.0