PEPATAC is a pipeline designed to process ATAC-seq data. For more information see: http://pepatac.databio.org/
Docs
Develop docs with:
mkdocs serve -f mkdocs.yml
Build and deploy with:
mkdocs build -f mkdocs.yml -d $CODEBASE/code.databio.org/pepatac/
Contributing
Pull requests welcome. Active development should occur in a development or feature branch.
Contributors
- Jason Smith, jasonsmith@virginia.edu
- Nathan Sheffield, nathan@code.databio.org
- Jin Xu, jinxu9@stanford.edu
- Ryan Corces, rcorces@stanford.edu
- Vince Reuter, vreuter@protonmail.com
- Others... (add your name)
Citing
If you find PEPATAC useful in your research, please cite:
Jason P. Smith, M. Ryan Corces, Jin Xu, Vincent P. Reuter, Howard Y. Chang, and Nathan C. Sheffield. PEPATAC: An optimized ATAC-seq pipeline with serial alignments. bioRxiv (2021). DOI: 10.1101/2020.10.21.347054
