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logo Pypiper

Pypiper is a lightweight python toolkit that helps you write slick pipelines in python. It takes your current pipeline (e.g. shell script) and improves it with minimal effort. You'll be running in minutes.

Contents

.. toctree::
   :titlesonly:
   :caption: Getting Started
   :maxdepth: 1

   intro.rst
   features.rst
   hello-world.rst

.. toctree::
   :caption: How to use a pipeline
   :maxdepth: 2

   locating-pipelines.rst
   usage.rst

.. toctree::
   :titlesonly:
   :caption: How to develop a pipeline

   tutorials.rst
   functions.rst
   develop-arguments.rst
   develop-config.rst
   develop-follow.rst
   develop-statistics.rst
   best-practices.rst
   advanced.rst

.. toctree::
   :caption: Toolkits
   :maxdepth: 2

   toolkits.rst
   ngstk.rst

.. toctree::
   :caption: Reference
   :maxdepth: 2

   api.rst
   outputs.rst
   faq.rst
   changelog.rst
   support.rst
   GitHub <http://github.com/epigen/pypiper>



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