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Syntax Error running refgenie with python2 #155

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eugeneke-bioinf opened this issue Jan 2, 2020 · 2 comments
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Syntax Error running refgenie with python2 #155

eugeneke-bioinf opened this issue Jan 2, 2020 · 2 comments
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@eugeneke-bioinf
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@eugeneke-bioinf eugeneke-bioinf commented Jan 2, 2020

I had refgenie working earlier, but its now giving me the following error:
File "/home/usr/.local/bin/refgenie", line 6, in
from refgenie.refgenie import main
File "/home/usr/.local/lib/python2.7/site-packages/refgenie/refgenie.py", line 417
specified_asset_keys, specified_assets = [*parsed_parents_input], [*parsed_parents_input.values()]

I've deleted the site package and tried building from source and it throws that same error. Any thoughts?

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@stolarczyk stolarczyk commented Jan 3, 2020

Can you confirm you're using the latest version of refgenie and refgenconf? Run: pip freeze | grep 'refgen'

What command resulted in this error?

@stolarczyk stolarczyk self-assigned this Jan 3, 2020
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@stolarczyk stolarczyk commented Jan 3, 2020

nevermind, that's python2 incompatibility. It will be fixed in the next release. Thanks for reporting!

@stolarczyk stolarczyk added the bug label Jan 3, 2020
stolarczyk added a commit that referenced this issue Jan 3, 2020
@stolarczyk stolarczyk changed the title Syntax Error running refgenie Syntax Error running refgenie with python2 Jan 3, 2020
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