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mutation calling using bcftools or mutect #76
Following a discussion here #37 and my zoom call with Erin.
I recently deal with SNV calling a lot and gained experience with various variant callers such as mutect (now part of GATK), freebayes (not a somatic caller) and lancet.
should we teach mutect which can be used for a real-life data sets?
we can leave the development of the somatic calling after the first release.