Duplicate get error result (reporting)

[mih]

Get a file with invalid filename (extension missing):

$ datalad clone git@github.com:datalad-datasets/human-connectome-project-openaccess.git hcp
$ cd hcp
$ datalad -f json_pp get HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii
# and again when the subdatasets are present
$ datalad -f json_pp get HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii
{
  "action": "get",
  "message": "path does not exist",
  "path": "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii",
  "refds": null,
  "status": "impossible"
}
{
  "action": "get",
  "message": "path does not exist",
  "path": "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii",
  "refds": null,
  "status": "impossible"
}

Unclear why a second attempt is made, when first attempt finds "path does not exist".

[mih]

The reason is that the main subdatasets call in get https://github.com/datalad/datalad/blob/maint/datalad/distribution/get.py#L847-L860 yields two results with candidate subdatasets, in both of which an annex-get is attempted.

iLOOPDS {'action': 'subdataset', 'type': 'dataset', 'status': 'ok', 'gitshasum': 'f3ce9b6abdec317b03e13ef546a92b60ddbe9a1c', 'path': '/tmp/hcp/HCP1200/705341', 'gitmodule_url': './HCP1200/705341', 'gitmodule_branch': 'master', 'gitmodule_datalad-id': '5c5cf266-21d1-11ea-a4b1-002590496000', 'gitmodule_name': '705341', 'parentds': '/tmp/hcp', 'contains': ['/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii'], 'refds': '/tmp/hcp'}
get(impossible): /tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii [path does not exist]
iLOOPDS {'action': 'subdataset', 'type': 'dataset', 'status': 'ok', 'gitshasum': '7da55b1c3eabe7d9ef8ec211629faa0dc0e9712c', 'path': '/tmp/hcp/HCP1200/705341/MNINonLinear', 'gitmodule_url': './MNINonLinear', 'gitmodule_datalad-id': '693838c4-21d1-11ea-871b-002590496000', 'gitmodule_name': 'MNINonLinear', 'parentds': '/tmp/hcp/HCP1200/705341', 'contains': ['/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii'], 'refds': '/tmp/hcp'}
get(impossible): /tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii [path does not exist]

As seen above, the subdatasets are tested in the "wrong" order, seemingly.

The reason given in the code:

                # always come from the top to get sensible generator behavior
                bottomup=False,

does not really explain anything. However, the thing makes more sense when coming from a situation where no subdatasets are installed. Although still not completely.

I guess a unittest for this behavior is in order.

[mih]

More detail: The error is coming out of _install_targetpath() at https://github.com/datalad/datalad/blob/master/datalad/distribution/get.py#L929 where it is still about obtaining the necessary subdatasets, not about getting file content. So one approach could be to add a check at https://github.com/datalad/datalad/blob/master/datalad/distribution/get.py#L939 whether we have already reported on a particular path not being present. Or maybe even better to prevent calling _install_targetpath() a second time, when there is not hope for improvement. However, that might be tricky to find out, we might need to track installation of relevant intermediate subdatasets.

[mih]

Still happening.

[yarikoptic]

seems to be fixed and just not closed by #7093 because against maint, uff

❯ datalad clone git@github.com:datalad-datasets/human-connectome-project-openaccess.git hcp
install(ok): /tmp/hcp (dataset)                                                                                                  
❯ cd hcp
DATA_USE_AGREEMENT.md  HCP1200/  README.md
❯ datalad -f json_pp get HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii
{                                                                                                                                
  "action": "install",
  "message": [
    "Installed subdataset in order to get %s",
    "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii"
  ],
  "path": "/tmp/hcp/HCP1200/705341",
  "source": {
    "default_destpath": "5c5cf266-21d1-11ea-a4b1-002590496000",
    "giturl": "http://store.datalad.org/5c5/cf266-21d1-11ea-a4b1-002590496000",
    "source": "ria+http://store.datalad.org#5c5cf266-21d1-11ea-a4b1-002590496000",
    "type": "ria",
    "version": null
  },
  "status": "ok",
  "type": "dataset"
}
[INFO   ] scanning for annexed files (this may take some time)                                                                   
{
  "action": "install",
  "message": [
    "Installed subdataset in order to get %s",
    "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii"
  ],
  "path": "/tmp/hcp/HCP1200/705341/MNINonLinear",
  "source": {
    "default_destpath": "693838c4-21d1-11ea-871b-002590496000",
    "giturl": "http://store.datalad.org/693/838c4-21d1-11ea-871b-002590496000",
    "source": "ria+http://store.datalad.org#693838c4-21d1-11ea-871b-002590496000",
    "type": "ria",
    "version": null
  },
  "status": "ok",
  "type": "dataset"
}
{
  "action": "get",
  "message": "path does not exist",
  "path": "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii",
  "refds": "/tmp/hcp",
  "status": "impossible"
}
datalad -f json_pp get   5.14s user 1.39s system 55% cpu 11.692 total
❯ datalad -f json_pp get HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii
{
  "action": "get",
  "message": "path does not exist",
  "path": "/tmp/hcp/HCP1200/705341/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii",
  "refds": "/tmp/hcp",
  "status": "impossible"
}
❯ datalad --version
datalad 0.17.8+39.ga8b4ae996