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microscopes-hmm

Contains the implementation of a Hierarchical Dirichlet Process Hidden Markov Model (HDP-HMM). Inference is via the beam sampler as described in this paper: http://mlg.eng.cam.ac.uk/pub/pdf/VanSaaTehGha08.pdf

Installation

Follow the instructions in the common project for setting up your Anaconda environment and adding the necessary binstar channels. Then run

$ conda install microscopes-hmm

(though this doesn't actually work yet, this will be how to install it)

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Infinite Hidden Markov Model (iHMM) for datamicroscopes

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