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DemoBadPatchRealImage working.

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1 parent 6982d0f commit 369159cd948afa6943a6da0ce335eb72c79be7a0 @daviddoria committed Feb 20, 2012
@@ -157,18 +157,22 @@ int main(int argc, char *argv[])
typedef std::less<float> PriorityCompareType;
PriorityCompareType lessThanFunctor;
- typedef boost::d_ary_heap_indirect<VertexDescriptorType, 4, IndexInHeapMap, PriorityMapType, PriorityCompareType> BoundaryNodeQueueType;
+ typedef boost::d_ary_heap_indirect<VertexDescriptorType, 4, IndexInHeapMap, PriorityMapType, PriorityCompareType>
+ BoundaryNodeQueueType;
BoundaryNodeQueueType boundaryNodeQueue(priorityMap, index_in_heap, lessThanFunctor);
// Create the descriptor visitor
- typedef ImagePatchDescriptorVisitor<VertexListGraphType, ImageType, ImagePatchDescriptorMapType> ImagePatchDescriptorVisitorType;
+ typedef ImagePatchDescriptorVisitor<VertexListGraphType, ImageType, ImagePatchDescriptorMapType>
+ ImagePatchDescriptorVisitorType;
ImagePatchDescriptorVisitorType imagePatchDescriptorVisitor(image, mask, imagePatchDescriptorMap, patch_half_width);
// Create the inpainting visitor
typedef InpaintingVisitor<VertexListGraphType, ImageType, BoundaryNodeQueueType, FillStatusMapType,
- ImagePatchDescriptorVisitorType, PriorityType, PriorityMapType, BoundaryStatusMapType> InpaintingVisitorType;
+ ImagePatchDescriptorVisitorType, PriorityType, PriorityMapType, BoundaryStatusMapType>
+ InpaintingVisitorType;
InpaintingVisitorType inpaintingVisitor(image, mask, boundaryNodeQueue, fillStatusMap,
- imagePatchDescriptorVisitor, priorityMap, &priorityFunction, patch_half_width, boundaryStatusMap);
+ imagePatchDescriptorVisitor, priorityMap, &priorityFunction, patch_half_width,
+ boundaryStatusMap);
InitializePriority(mask, boundaryNodeQueue, priorityMap, &priorityFunction, boundaryStatusMap);
@@ -186,7 +190,7 @@ int main(int argc, char *argv[])
// Perform the inpainting
inpainting_loop(graph, inpaintingVisitor, boundaryStatusMap, boundaryNodeQueue, linearSearchBest, patchInpainter);
- HelpersOutput::WriteImage<ImageType>(image, outputFilename);
+ OutputHelpers::WriteImage<ImageType>(image, outputFilename);
return EXIT_SUCCESS;
}
@@ -27,8 +27,8 @@ struct DescriptorVisitorConcept
BOOST_CONCEPT_USAGE(DescriptorVisitorConcept)
{
- vis.initialize_vertex(u);// Function called on all vertices during the initialization phase.
- vis.discover_vertex(u); // Function called when a live vertex is taken out of the priority-queue.
+ vis.InitializeVertex(u);// Function called on all vertices during the initialization phase.
+ vis.DiscoverVertex(u); // Function called when a live vertex is taken out of the priority-queue.
};
};
View
@@ -1,8 +1,8 @@
-add_executable(DemoBoundaryNormals DemoBoundaryNormals.cpp)
-target_link_libraries(DemoBoundaryNormals PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
-
-add_executable(DemoBoundaryNormals2 DemoBoundaryNormals2.cpp)
-target_link_libraries(DemoBoundaryNormals2 PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+# add_executable(DemoBoundaryNormals DemoBoundaryNormals.cpp)
+# target_link_libraries(DemoBoundaryNormals PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
+#
+# add_executable(DemoBoundaryNormals2 DemoBoundaryNormals2.cpp)
+# target_link_libraries(DemoBoundaryNormals2 PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
#
# add_executable(DemoClusterColors DemoClusterColors.cpp)
# target_link_libraries(DemoClusterColors PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
@@ -16,42 +16,54 @@ target_link_libraries(DemoBoundaryNormals2 PatchBasedInpainting ${VTK_LIBRARIES}
# add_executable(DemoColorImageByScore DemoColorImageByScore.cpp)
# target_link_libraries(DemoColorImageByScore PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES})
-add_executable(DemoCreateImage DemoCreateImage.cpp)
-target_link_libraries(DemoCreateImage PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
+# add_executable(DemoCreateImage DemoCreateImage.cpp)
+# target_link_libraries(DemoCreateImage PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
# add_executable(DemoCreateMask DemoCreateMask.cpp)
# target_link_libraries(DemoCreateMask PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
-add_executable(DemoDerivatives DemoDerivatives.cpp)
-target_link_libraries(DemoDerivatives PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
-
-add_executable(DemoErroneousGradient DemoErroneousGradient.cpp)
-target_link_libraries(DemoErroneousGradient PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
-
-add_executable(DemoFindPixelAcrossHole DemoFindPixelAcrossHole.cpp)
-target_link_libraries(DemoFindPixelAcrossHole PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
-
-add_executable(DemoFollowIsophotesAcrossBoundary DemoFollowIsophotesAcrossBoundary.cpp ${ROOT_SOURCE_DIR}/ImageProcessing/MaskOperations.cpp)
-target_link_libraries(DemoFollowIsophotesAcrossBoundary PatchBasedInpainting
-${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-
-add_executable(DemoGradient DemoGradient.cpp)
-target_link_libraries(DemoGradient PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-
-add_executable(DemoInnerOuterBoundary DemoInnerOuterBoundary.cpp)
-target_link_libraries(DemoInnerOuterBoundary PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
-
-add_executable(DemoIsophotes DemoIsophotes.cpp ${ROOT_SOURCE_DIR}/ImageProcessing/MaskOperations.cpp)
-target_link_libraries(DemoIsophotes PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-
-add_executable(DemoPatchDifference DemoPatchDifference.cpp)
-target_link_libraries(DemoPatchDifference PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+# add_executable(DemoDerivatives DemoDerivatives.cpp)
+# target_link_libraries(DemoDerivatives PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
+#
+# add_executable(DemoErroneousGradient DemoErroneousGradient.cpp)
+# target_link_libraries(DemoErroneousGradient PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+#
+# add_executable(DemoFindPixelAcrossHole DemoFindPixelAcrossHole.cpp)
+# target_link_libraries(DemoFindPixelAcrossHole PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+#
+# add_executable(DemoFollowIsophotesAcrossBoundary DemoFollowIsophotesAcrossBoundary.cpp
+# ${ROOT_SOURCE_DIR}/ImageProcessing/MaskOperations.cpp)
+# target_link_libraries(DemoFollowIsophotesAcrossBoundary PatchBasedInpainting
+# ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-add_executable(DemoPatchImageDifference DemoPatchImageDifference.cpp)
-target_link_libraries(DemoPatchImageDifference PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+# add_executable(DemoGradient DemoGradient.cpp)
+# target_link_libraries(DemoGradient PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+#
+# add_executable(DemoInnerOuterBoundary DemoInnerOuterBoundary.cpp)
+# target_link_libraries(DemoInnerOuterBoundary PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES})
+#
+# add_executable(DemoIsophotes DemoIsophotes.cpp ${ROOT_SOURCE_DIR}/ImageProcessing/MaskOperations.cpp)
+# target_link_libraries(DemoIsophotes PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+#
+# add_executable(DemoPatchDifference DemoPatchDifference.cpp)
+# target_link_libraries(DemoPatchDifference PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+#
+# add_executable(DemoPatchImageDifference DemoPatchImageDifference.cpp)
+# target_link_libraries(DemoPatchImageDifference PatchBasedInpainting ${VTK_LIBRARIES} ${ITK_LIBRARIES} libHelpers)
+#
+# add_executable(DemoPatchSearchFunction DemoPatchSearchFunction.cpp)
+# target_link_libraries(DemoPatchSearchFunction PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+#
+# add_executable(DemoSelfPatchCompare DemoSelfPatchCompare.cpp)
+# target_link_libraries(DemoSelfPatchCompare PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-add_executable(DemoPatchSearchFunction DemoPatchSearchFunction.cpp)
-target_link_libraries(DemoPatchSearchFunction PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+add_executable(DemoBadPatchComparison DemoBadPatchComparison.cpp)
+target_link_libraries(DemoBadPatchComparison PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
-add_executable(DemoSelfPatchCompare DemoSelfPatchCompare.cpp)
-target_link_libraries(DemoSelfPatchCompare PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
+QT4_WRAP_UI(DemoBadPatchRealImageUISrcs ${ROOT_SOURCE_DIR}/Interactive/TopPatchesDialog.ui)
+QT4_WRAP_CPP(DemoBadPatchRealImageMOCSrcs ${ROOT_SOURCE_DIR}/Interactive/TopPatchesDialog.h
+ ${ROOT_SOURCE_DIR}/Interactive/Delegates/PixmapDelegate.h)
+add_executable(DemoBadPatchRealImage DemoBadPatchRealImage.cpp
+${ROOT_SOURCE_DIR}/Interactive/Delegates/PixmapDelegate.cpp
+${DemoBadPatchRealImageUISrcs} ${DemoBadPatchRealImageMOCSrcs})
+target_link_libraries(DemoBadPatchRealImage PatchBasedInpainting ${ITK_LIBRARIES} ${VTK_LIBRARIES} ${QT_LIBRARIES} libHelpers)
@@ -71,8 +71,9 @@ int main(int argc, char *argv[])
++shiftedImageIterator;
}
- ImageType::PixelType averagePixel = ITKHelpers::AverageInRegion(noisyImage, noisyImage->GetLargestPossibleRegion());
- ITKHelpers::SetRegionToConstant(averageImage, averageImage->GetLargestPossibleRegion(), averagePixel);
+ ImageType::PixelType averagePixel = ITKHelpers::AverageInRegion(noisyImage.GetPointer(),
+ noisyImage->GetLargestPossibleRegion());
+ ITKHelpers::SetRegionToConstant(averageImage.GetPointer(), averageImage->GetLargestPossibleRegion(), averagePixel);
return EXIT_SUCCESS;
}
@@ -37,6 +37,77 @@
#include "itkImage.h"
#include "itkImageFileReader.h"
+typedef itk::VectorImage<float, 2> ImageType;
+
+struct DemoDriver
+{
+
+ typedef boost::grid_graph<2> VertexListGraphType;
+ typedef boost::graph_traits<VertexListGraphType>::vertex_descriptor VertexDescriptorType;
+ typedef ImagePatchPixelDescriptor<ImageType> ImagePatchPixelDescriptorType;
+ typedef boost::property_map<VertexListGraphType, boost::vertex_index_t>::const_type IndexMapType;
+ typedef boost::vector_property_map<ImagePatchPixelDescriptorType, IndexMapType> ImagePatchDescriptorMapType;
+ typedef ImagePatchDescriptorVisitor<VertexListGraphType, ImageType, ImagePatchDescriptorMapType> VisitorType;
+ typedef LinearSearchKNNProperty<ImagePatchDescriptorMapType,
+ ImagePatchDifference<ImagePatchPixelDescriptorType> > KNNSearchType;
+ VertexListGraphType* graph;
+
+ unsigned int PatchRadius;
+
+ ImageType* Image;
+ Mask* MaskImage;
+
+ VisitorType* Visitor;
+
+ KNNSearchType* KNNSearch;
+
+ ImagePatchDescriptorMapType* ImagePatchDescriptorMap;
+
+ DemoDriver(ImageType* const image, Mask* const mask) : graph(NULL), PatchRadius(15), Image(image), MaskImage(mask)
+ {
+ boost::array<std::size_t, 2> graphSideLengths = { { image->GetLargestPossibleRegion().GetSize()[0],
+ image->GetLargestPossibleRegion().GetSize()[1] } };
+ //VertexListGraphType graph(graphSideLengths);
+ graph = new VertexListGraphType(graphSideLengths);
+
+ // Get the index map
+ IndexMapType indexMap(get(boost::vertex_index, *graph));
+
+ // Create the descriptor map. This is where the data for each pixel is stored.
+ ImagePatchDescriptorMap = new ImagePatchDescriptorMapType(num_vertices(*graph), indexMap);
+
+ Visitor = new VisitorType(Image, MaskImage, *ImagePatchDescriptorMap, PatchRadius);
+
+ InitializeFromMaskImage<VisitorType, VertexDescriptorType>(MaskImage, Visitor);
+
+ // Create the nearest neighbor finders
+ KNNSearch = new KNNSearchType(*ImagePatchDescriptorMap, 1000);
+ }
+
+ void DisplayTopPatches(VertexDescriptorType targetNode)
+ {
+ Visitor->DiscoverVertex(targetNode);
+
+ std::vector<VertexDescriptorType> bestSourceNodes;
+ typename boost::graph_traits<VertexListGraphType>::vertex_iterator vi,vi_end;
+ tie(vi,vi_end) = vertices(*graph);
+ (*KNNSearch)(vi, vi_end, targetNode, bestSourceNodes);
+
+ std::cout << "There are " << bestSourceNodes.size() << " bestSourceNodes." << std::endl;
+
+ TopPatchesDialog<ImageType>* topPatchesDialog = new TopPatchesDialog<ImageType>(Image, MaskImage, PatchRadius);
+ topPatchesDialog->SetQueryNode(targetNode);
+ topPatchesDialog->SetSourceNodes(bestSourceNodes);
+ //topPatchesDialog->exec();
+ topPatchesDialog->show();
+
+ // Return the node to an invalid state
+ ImagePatchPixelDescriptorType& descriptor = get(*ImagePatchDescriptorMap, targetNode);
+ descriptor.SetStatus(PixelDescriptor::INVALID);
+ }
+
+};
+
int main(int argc, char *argv[])
{
if(argc != 3)
@@ -48,7 +119,6 @@ int main(int argc, char *argv[])
std::string imageFileName = argv[1];
std::string maskFileName = argv[2];
- typedef itk::VectorImage<float, 2> ImageType;
typedef itk::ImageFileReader<ImageType> ImageReaderType;
ImageReaderType::Pointer imageReader = ImageReaderType::New();
imageReader->SetFileName(imageFileName);
@@ -62,60 +132,23 @@ int main(int argc, char *argv[])
maskReader->SetFileName(maskFileName);
maskReader->Update();
- itk::Index<2> centerGood = {{503,156}};
- itk::Index<2> centerBad = {{503,146}};
-
- const unsigned int patchRadius = 15;
- itk::ImageRegion<2> regionGood = ITKHelpers::GetRegionInRadiusAroundPixel(centerGood, patchRadius);
- itk::ImageRegion<2> regionBad = ITKHelpers::GetRegionInRadiusAroundPixel(centerBad, patchRadius);
-
-
- typedef ImagePatchPixelDescriptor<ImageType> ImagePatchPixelDescriptorType;
-
- // Create the graph
- typedef boost::grid_graph<2> VertexListGraphType;
- boost::array<std::size_t, 2> graphSideLengths = { { imageReader->GetOutput()->GetLargestPossibleRegion().GetSize()[0],
- imageReader->GetOutput()->GetLargestPossibleRegion().GetSize()[1] } };
- VertexListGraphType graph(graphSideLengths);
- typedef boost::graph_traits<VertexListGraphType>::vertex_descriptor VertexDescriptorType;
-
- // Get the index map
- typedef boost::property_map<VertexListGraphType, boost::vertex_index_t>::const_type IndexMapType;
- IndexMapType indexMap(get(boost::vertex_index, graph));
-
- // Create the descriptor map. This is where the data for each pixel is stored.
- typedef boost::vector_property_map<ImagePatchPixelDescriptorType, IndexMapType> ImagePatchDescriptorMapType;
- ImagePatchDescriptorMapType imagePatchDescriptorMap(num_vertices(graph), indexMap);
-
- typedef ImagePatchDescriptorVisitor<VertexListGraphType, ImageType, ImagePatchDescriptorMapType> VisitorType;
- VisitorType visitor(imageReader->GetOutput(), maskReader->GetOutput(), imagePatchDescriptorMap, patchRadius);
-
- InitializeFromMaskImage<VisitorType, VertexDescriptorType>(maskReader->GetOutput(), &visitor);
-
- // Create the nearest neighbor finders
- typedef LinearSearchKNNProperty<ImagePatchDescriptorMapType,
- ImagePatchDifference<ImagePatchPixelDescriptorType> > KNNSearchType;
- KNNSearchType knnSearch(imagePatchDescriptorMap, 100);
-
- VertexDescriptorType goodTargetNode = Helpers::ConvertFrom<VertexDescriptorType, itk::Index<2> >(centerGood);
- //VertexDescriptorType badTargetNode = Helpers::ConvertFrom<VertexDescriptorType, itk::Index<2> >(centerBad);
-
- VertexDescriptorType targetNode = goodTargetNode;
+ // Setup the GUI system
+ QApplication app( argc, argv );
- std::vector<VertexDescriptorType> bestSourceNodes;
- typename boost::graph_traits<VertexListGraphType>::vertex_iterator vi,vi_end;
- tie(vi,vi_end) = vertices(graph);
- knnSearch(vi, vi_end, goodTargetNode, bestSourceNodes);
+ DemoDriver demoDriver(imageReader->GetOutput(), maskReader->GetOutput());
- std::cout << "There are " << bestSourceNodes.size() << " bestSourceNodes." << std::endl;
+ itk::Index<2> centerGood = {{503,156}};
+ DemoDriver::VertexDescriptorType goodTargetNode = Helpers::ConvertFrom<DemoDriver::VertexDescriptorType,
+ itk::Index<2> >(centerGood);
+ demoDriver.DisplayTopPatches(goodTargetNode);
- // Setup the GUI system
- QApplication app( argc, argv );
+ // itk::Index<2> centerBad = {{503,146}}; // The top 1000 matches to this patch are completely wrong
+ itk::Index<2> centerBad = {{503,147}};
+ DemoDriver::VertexDescriptorType badTargetNode = Helpers::ConvertFrom<DemoDriver::VertexDescriptorType,
+ itk::Index<2> >(centerBad);
+ demoDriver.DisplayTopPatches(badTargetNode);
- TopPatchesDialog<ImageType> topPatchesDialog(imageReader->GetOutput(), maskReader->GetOutput(), patchRadius);
- topPatchesDialog.SetQueryNode(targetNode);
- topPatchesDialog.SetSourceNodes(bestSourceNodes);
- topPatchesDialog.exec();
+ app.exec();
return EXIT_SUCCESS;
}
@@ -45,6 +45,7 @@ struct ImagePatchDifference
float totalDifference = 0.0f;
+ // If both nodes are source nodes, compare them fully.
if(a.GetStatus() == ImagePatchType::SOURCE_NODE && b.GetStatus() == ImagePatchType::SOURCE_NODE)
{
itk::Offset<2> offsetAToB = b.GetCorner() - a.GetCorner();
@@ -70,6 +71,7 @@ struct ImagePatchDifference
++patchAIterator;
}
}
+ // If one of the nodes is a target node, only compare in it's list of valid offset pixels.
else if(a.GetStatus() == ImagePatchType::TARGET_NODE || b.GetStatus() == ImagePatchType::TARGET_NODE)
{
const std::vector<itk::Offset<2> >* validOffsets;
@@ -718,7 +718,7 @@ typename TImage::PixelType AverageOfPixelsAtIndices(const TImage* const image, c
template<typename TImage>
typename TImage::PixelType AverageInRegion(const TImage* const image, const itk::ImageRegion<2>& region)
{
- typename itk::ImageRegionIterator<TImage> imageIterator(image, region);
+ typename itk::ImageRegionConstIterator<TImage> imageIterator(image, region);
std::vector<typename TImage::PixelType> pixels;
while(!imageIterator.IsAtEnd())
{
@@ -37,7 +37,9 @@ Q_OBJECT
public slots:
+ /** Ideally this would be templated on the node type, but since it is a slot it cannot be templated. */
virtual void SetSourceNodes(const std::vector<Node>& sourceNodes) = 0;
+
virtual void SetQueryNode(const Node& queryNode) = 0;
virtual void slot_Selected(const QModelIndex & index) = 0;
};
@@ -78,6 +80,9 @@ class TopPatchesDialog : public TopPatchesDialogParent
/** Set the source nodes from which the user can choose. */
void SetSourceNodes(const std::vector<Node>& nodes);
+ template <typename TNode>
+ void SetSourceNodes(const std::vector<TNode>& sourceNodes);
+
/** Set the query node that the user will choose the best match to. */
void SetQueryNode(const Node& node);
@@ -51,6 +51,19 @@ void TopPatchesDialog<TImage>::SetSourceNodes(const std::vector<Node>& nodes)
}
template <typename TImage>
+template <typename TNode>
+void TopPatchesDialog<TImage>::SetSourceNodes(const std::vector<TNode>& sourceNodes)
+{
+ std::vector<Node> nodes;
+ for(unsigned int i = 0; i < sourceNodes.size(); ++i)
+ {
+ Node node = Helpers::ConvertFrom<Node, TNode>(sourceNodes[i]);
+ nodes.push_back(node);
+ }
+ SetSourceNodes(nodes);
+}
+
+template <typename TImage>
void TopPatchesDialog<TImage>::SetQueryNode(const Node& queryNode)
{
this->QueryNode = queryNode;
View
@@ -60,6 +60,11 @@ class Node
return coord[component];
}
+ int& operator[](const unsigned int& component)
+ {
+ return coord[component];
+ }
+
template <typename T>
void CreateFromObject(const T& object)
{
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