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* Copyright David Doria 2011
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* See the License for the specific language governing permissions and
* limitations under the License.
#ifndef SmallHoleFiller_H
#define SmallHoleFiller_H
// Submodules
#include "Mask/Mask.h"
// ITK
#include "itkImage.h"
template<typename TImage>
class SmallHoleFiller
/** Constructor */
/** Constructor */
SmallHoleFiller(TImage* const image, Mask* const mask);
/** Set the image to fill */
void SetImage(TImage* const image);
/** In this class, non-zero pixels indicate valid pixels, while zero pixels indicate pixels to be filled. */
void SetMask(const Mask* const mask);
/** Get the mask. */
Mask* GetMask();
/** Get the output. */
TImage* GetOutput();
/** This is the main loop. It simply calls Iterate() until complete.*/
void Fill();
/** This is the core functionality.*/
void Iterate();
/** Determine if an image should be written at each iteration. */
void SetWriteIntermediateOutput(const bool);
/** Set the radius of the kernel to use for averaging. */
void SetKernelRadius(const unsigned int kernelRadius);
/** Set the factor by which to downsample the image before filling the hole. */
void SetDownsampleFactor(const unsigned int downsampleFactor);
/** Common functionality for all constructors. */
void SharedConstructor();
/** The image to fill. */
typename TImage::Pointer OriginalImage;
/** The downsampled image. */
typename TImage::Pointer Image;
/** The region in which to fill the image. */
Mask::Pointer OriginalMaskImage;
/** The downsampled mask. */
Mask::Pointer MaskImage;
/** The intermediate and eventually output image.*/
typename TImage::Pointer Output;
/** The flag determining if debug images should be written. */
bool WriteIntermediateOutput;
/** The current iteration. This is only used to write debug images. */
unsigned int CurrentIteration;
/** The radius of the kernel in which to average valid pixels. */
unsigned int KernelRadius;
/** The factor by which to downsample the image before filling the hole. */
unsigned int DownsampleFactor;
#include "SmallHoleFiller.hpp"
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