A Java library for easy access to an NCBI taxonomy database
- Provides a Hibernate-based object-relational interface to the NCBI taxonomy database, and convenience classes for navigating it.
- In particular, makes the NCBI taxonomy available as objects conforming to phyloutils APIs.
Maven is by far the easiest way to make use of ncbitaxonomy. Just add these to your pom.xml:
<repositories>
<repository>
<id>dev.davidsoergel.com releases</id>
<url>http://dev.davidsoergel.com/nexus/content/repositories/releases</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>dev.davidsoergel.com snapshots</id>
<url>http://dev.davidsoergel.com/nexus/content/repositories/snapshots</url>
<releases>
<enabled>false</enabled>
</releases>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>edu.berkeley.compbio</groupId>
<artifactId>ncbitaxonomy</artifactId>
<version>0.9</version>
</dependency>
</dependencies>
If you really want just the jar, you can get the latest release from the Maven repo; or get the latest stable build from the build server.