A Java library for dealing with biological sequences.
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sequtils.iml
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README.md

sequtils

A Java library for dealing with biological sequences

  • Provides a few simple APIs and utility classes having to do with biological sequences and sequence metadata.

Documentation

Download

Maven is by far the easiest way to make use of dsutils. Just add these to your pom.xml:

<repositories>
	<repository>
		<id>dev.davidsoergel.com releases</id>
		<url>http://dev.davidsoergel.com/nexus/content/repositories/releases</url>
		<snapshots>
			<enabled>false</enabled>
		</snapshots>
	</repository>
	<repository>
		<id>dev.davidsoergel.com snapshots</id>
		<url>http://dev.davidsoergel.com/nexus/content/repositories/snapshots</url>
		<releases>
			<enabled>false</enabled>
		</releases>
	</repository>
</repositories>

<dependencies>
	<dependency>
		<groupId>edu.berkeley.compbio</groupId>
		<artifactId>sequtils</artifactId>
		<version>0.911</version>
	</dependency>
</dependencies>

If you really want just the jar, you can get the latest release from the Maven repo; or get the latest stable build from the build server.