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Map analysis code ================= This directory contains the code for Willshaw &al. (2013) "Analysis of local and global topographic order in mouse retinocollicular maps". Each directory contains the following: * lib: The core code. * cang: Code specific to analysis of the data of Cang &al (2008). To generate figures, type "figures" at Matlab prompt. To generate a CSV file of statistics ("summary_stats.csv"), type "get_summary_stats()". * misc: An R script to extract statistics presented in the paper from the "summary_stats.csv" file generated as explained above. To run the script, start R and type 'source("analyse-summary-stats.R")'. * old: Redundant code - much can probably be dispensed with. Git tags ======== adrianna-may-2011 - The files as handed over by Adrianna adrianna-final-cleaned - The files minus all the derived (pdf, xls, eps) files adrianna-dw-changes - David Willshaw's changes to Adrianna's existing files pre-directory-reorg - The state of code just before reorganisation into lib and cang directories Git branches (only master has been pushed to GitHub) ==================================================== master - the main branch adrianna-final - files as Adrianna left them, complete wtith figures dw-figs-for-paper - Import of all M-files in David's Computing/Matlab/MapPrecision11/Adriannas_legacy/Figs_for_paper directory dw-figs-for-paper-clean - Cleaned up version of above merge-sim-exp - Branch in which work on merging experiment- and simulation-specific code was carried out