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Welcome to the [BioHackathon 2012] (http://2012.biohackathon.org/) Wiki!

Symposium presentations

• Slides

Publications

• BH11 submissions
• BH12 submissions

Discussion groups

• RDF applications (genome, pathway, glycoinfo etc.) -- incl. data models, web applications
  • Feature annotation locations in RDF
    • Feature Annotation Location Description Ontology
    • Protein Domain RDF
    • Genome-RDF
    • Genome/Human gene annotation RDF
    • JBrowse on SPARQL
  • Open Bio* and tools (converters)
    • GFF, GenBank, etc to Feature annotation locations in RDF
    • [BioInterchange] (http://www.biointerchange.org/)
    • Cufflinks RDF
    • Ensembl RDF
    • BioRuby refactoring/reconstruction
    • G-language Project
  • Use cases
    • glycoinfo
    • Genome/Microbe
    • Rare disease
      • Draft of linked rare disease data contribution to overview paper
    • names of species
    • coexpression database of animal genes (COXPRESdb)
    • RDFization of the Life Science Dictionary
    • Practical use case and applications (TogoRecipes)
• Ontology working group
  • Guidelines for bio-ontology building
  • Consistency checking in OBO-formatted ontologies
  • Format transformations (e.g. obo2rdf)
  • Use cases: MEO and Enzyme reaction equations
  • BioPortal Normalization
  • SIO refactoring
• Text mining
  • Natural Language Query Processing
  • Expansion/population of DBCLS knowledge bases
  • RDFizing Text Mining Results
  • Visualization of BioPortal ontology mappings
  • Annotating PDF documents with ontology terms
  • Improving a Literature Recommendation Service
  • Draft of NLP/text mining contribution to overview paper
• Interoperability and sustainability
  • [Requirements for a long term life open data provisioning project] (https://docs.google.com/document/d/1Pnz55Y-KLH_HNte5xsnxSppEXE0sx7zpj-6-y16vO10/edit#)
  • Data quality (Yummy Data)
    • Monitoring
  • schema.org extension (Meta-data for search engine results)
  • Semantic analysis tools
• Knowledge discovery
  • Bio2RDF
  • SADI
  • Draft Knowledge Discovery materials for Overview publication
• Triplestore
  • Performance
  • Distributed query
  • Cloud solution
• Teaching semantic web technologies
  • [SPARQL learning course] (http://www.slideshare.net/jervenbolleman/uni-protsparqlcloud)
  • [SADI learning course] (http://sadiframework.org/slides/MIT2012.pdf)

Social goods

• https://twitter.com/#!/search/%23biohack12%20OR%20%23bh12 (Twitter hashtags #BioHack12 or #bh12)
• Twitter log from the symposium and main hackathon and closing session
• Photos