Seminar

We'll have an informal seminar on the first day of the meeting (19 Feb 2016). The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc., then we can start practical discussions what we can collaboratively achieve during a week.

Program

Tentative titles of the 2nd RDF summit seminar. Order of the talks yet to be determined.

Feb 19th, 13:00-16:00.

• Toshiaki Katayama
  • Introduction to the 2nd DBCLS RDF summit
• Masao Nagasaki
  • Japanese genome project in Tohoku Medical Megabank
• Adam Novak
  • The Human Genome Variation Map Graph Bake-Off
• Erik Garrison
  • A toolkit for working with genome variation graphs (see also a recent, similar presentation)
• Jouni Sirén
  • Indexing Graphs for Path Queries
• Orion Buske
  • Exchanging case summaries to discover rare disease cohorts across organizations
• Jerven Bolleman
  • RDF/SPARQL a Swiss-Prot practical perspective
• Kieron Taylor
  • Annotation —???—> variant graph
• Maciek Smuga-Otto
  • Big vs enormous data in genomics
• Hajime Suzuki
  • Fast dynamic programming algorithm for nucleotide sequences, and long read alignment on string graphs
• Kana Shimizu
  • SlideSort for comparative NGS data and privacy preserving search for sensitive data

Group photo

• Photos by Toshiaki's iPhone