/u-of-pitt-SPL-drug-NER

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Commits on Jul 19, 2016
  1. @ningyifan

    revise converting script

    ningyifan committed Jul 19, 2016
    9bd6215
Commits on Jun 30, 2016
  1. @ningyifan

    add sample test set for PMC3091944

    ningyifan committed Jun 30, 2016
    8db1158
Commits on Jun 16, 2016
  1. @ningyifan

    strip .txt as id based on file name

    ningyifan committed Jun 16, 2016
    c3a32a5
  2. @ningyifan

    add NERs output for 3 pmc sample articles

    ningyifan committed Jun 16, 2016
    0bb8e05
Commits on Mar 9, 2016
  1. @ningyifan

    trivial

    ningyifan committed Mar 9, 2016
    b5e9cfa
  2. @ningyifan

    update output ner.json for NT CT resutls

    ningyifan committed Mar 9, 2016
    e82741d
Commits on Sep 29, 2015

  1. trivial

    Richard Boyce committed Sep 29, 2015
    ec9d92d
Commits on May 29, 2015

  1. add regex to post process prefix and suffix

    Richard Boyce committed May 29, 2015
    5ffc77a
Commits on May 22, 2015

  1. change path for config file, filter out duplications of NER in conver… 

    …sion script
    Richard Boyce committed May 22, 2015
    8b119c1

  2. clean files, trivial

    Richard Boyce committed May 22, 2015
    f9dbeab

  3. change path for groovy config

    Richard Boyce committed May 22, 2015
    0578e06
Commits on May 19, 2015
  1. @ningyifan

    fix prefix/postfix offsets matching

    ningyifan committed May 19, 2015
    38ea8ec
  2. @ningyifan

    trivial changes

    ningyifan committed May 19, 2015
    40b26cf
Commits on Apr 18, 2015

  1. removed unnecessary comments

    serkanayvaz@gmail.com committed Apr 18, 2015
    24491f5
Commits on Apr 7, 2015
  1. @ningyifan

    revise to load and delete annotations on alive dailymed labels

    ningyifan committed Apr 7, 2015
    b1e4c39
  2. @ningyifan

    change prefix suffix length from 30 to 60

    ningyifan committed Apr 7, 2015
    c428e9d
  3. @ningyifan

    add scripts to converts NER outputs to json format

    ningyifan committed Apr 7, 2015
    cec3450
  4. @ningyifan

    document NER parsing program

    ningyifan committed Apr 7, 2015
    5eb3c56
Commits on Apr 6, 2015
  1. @ningyifan

    revise script to pulls specified sections from linkedSPLs core graph

    ningyifan committed Apr 6, 2015
    6f4c01e
  2. @ningyifan

    add script parse setids by drugname/dailymed label upon linkedSPLs co… 

    …re graph
    ningyifan committed Apr 6, 2015
    dcc35ef
Commits on Apr 4, 2015

  1. Added description of the Dictionary elements

    serkanayvaz@gmail.com committed Apr 4, 2015
    1d7b141
Commits on Feb 26, 2015

  1. updated the non-standard class mappings provided by Johann from his N… 

    …LM DDI NLP project
    codehop.dev committed Feb 26, 2015
    d6bbb6d
Commits on Jan 15, 2015
  1. @ningyifan

    revise IAA script to output report by pair of annotators and to add e… 

    …xample annotations
    ningyifan committed Jan 15, 2015
    47d852f
Commits on Dec 23, 2014

  1. made a note in the code of data element not included in the dictionary

    codehop.dev committed Dec 23, 2014
    f3592e5
Commits on Dec 21, 2014

  1. fixed truncation issue with OSCAR data when exported from SQL server

    codehop.dev committed Dec 21, 2014
    32a8fdb
Commits on Dec 9, 2014
  1. @ningyifan

    fix bug for IAA script on getting biomarker

    ningyifan committed Dec 9, 2014
    3fb0d4e
Commits on Nov 19, 2014
  1. @ningyifan

    add solomon as fully trained comparison in IAA

    ningyifan committed Nov 19, 2014
    0d26a6e
  2. @ningyifan

    revise IAA script to add compare header and replace person_id to actu… 

    …al username
    ningyifan committed Nov 19, 2014
    c270e31
Commits on Nov 18, 2014
  1. @ningyifan

    add script to calculate inter annotator agreement for all pgx annotat… 

    …ors from elastico
    ningyifan committed Nov 18, 2014
    07a9bab
Commits on Nov 17, 2014
  1. @ningyifan

    rename script that combine 5 data sources

    ningyifan committed Nov 17, 2014
    d4d90b2
  2. @ningyifan

    revised Drugbank and credibleMeds mappings to add new columns: manage… 

    …mentOptions, interaction description
    ningyifan committed Nov 17, 2014
    429f093
  3. @ningyifan

    add cleaned Drugbank pddis with description

    ningyifan committed Nov 17, 2014
    998917b

  4. changes to help export data for UI development

    codehop.dev committed Nov 17, 2014
    ec1ac53
  5. @ningyifan

    add script to query DIKB with evidences

    ningyifan committed Nov 17, 2014
    d9d4e95
Commits on Oct 27, 2014
  1. @ningyifan

    add mappings that merged drug name with rxcui and rxnorm type term

    ningyifan committed Oct 27, 2014
    686c19a