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The pod package

The pod package contains implementations of the methods compared in 'Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine'. Currently, this is a bare-bones package however, I will be updating it periodically with documentation, new methods etc.

How to install

Using a recent version of R (version >= 3.1) use the following commands:

source("http://bioconductor.org/biocLite.R")

biocLite(c("Biobase", "devtools"))

library(devtools)

install_github(rep="dbottomly/pod", ref="master")

Basic usage

See the vignette for typical usage:

library(pod)

vignette("pod")

How to contribute

Please send me an email if you are interested in contributing.

Contact

Dan Bottomly bottomly@ohsu.edu

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Tools for patient-specific expression outlier detection

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