@DD-DeCaF

Data-Driven Design of Cell Factories and Communities

Pinned repositories

  1. tutorials

    Teaching materials for cobrapy, cameo, escher and DD-DeCaF

    Jupyter Notebook 4 5

  2. id-mapper

    ID mapper for biological entities (metabolites, reactions, genes, etc)

    Python 2

  3. upload

    uploading data to dd-decaf

    Python 1 1

  4. decaf-metabolica

    DD-DeCaF platform

    JavaScript

  5. metabolica-ui-pathways

    Frontend for running heterologous pathways predictions

    TypeScript

  6. model

    Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc

    Python

  • escher

    Forked from nkran/escher

    Build, view, share, and embed pathway maps.

    JavaScript 1 38 Updated Sep 20, 2018
  • TypeScript Apache-2.0 Updated Sep 18, 2018
  • DD-DeCaF Website

    CSS MIT Updated Sep 18, 2018
  • Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc

    Python Apache-2.0 Updated Sep 17, 2018
  • TypeScript Apache-2.0 Updated Sep 17, 2018
  • DD-DeCaF platform

    JavaScript Apache-2.0 Updated Sep 17, 2018
  • The storage for metabolic models used by the platform

    Python Apache-2.0 Updated Sep 12, 2018
  • A cookiecutter based on cookiecutter-pypackage for python packages in DD-DeCaF

    Python 1 Apache-2.0 Updated Sep 7, 2018
  • Angular single page application for uploading models and viewing reports.

    HTML 1 Updated Sep 5, 2018
  • Python Apache-2.0 Updated Sep 5, 2018
  • The storage for the experimental data used for modeling: omics, strains, media etc

    Python Apache-2.0 Updated Sep 5, 2018
  • A fork of the original webservice for deployment on the DD-DeCaF Kubernetes cluster.

    Python 2 Apache-2.0 Updated Sep 5, 2018
  • Base Docker image(s) for WSGI microservices in the DD-DeCaF organization

    Dockerfile Apache-2.0 Updated Aug 27, 2018
  • A cookiecutter template for creating microservices with Flask-RESTPlus.

    Python Apache-2.0 Updated Aug 24, 2018
  • A simple static file server to answer let's encrypt challenges for our domains.

    Shell Apache-2.0 Updated Jul 11, 2018
  • Identity and access management

    Python 1 Apache-2.0 Updated Jun 27, 2018
  • Match given gene name with reactions list

    Python Apache-2.0 Updated Jun 26, 2018
  • Abstraction layer for the DD-DeCaF warehouse

    Python Apache-2.0 Updated Jun 26, 2018
  • Python Apache-2.0 Updated Jun 25, 2018
  • Frontend for running heterologous pathways predictions

    TypeScript Apache-2.0 Updated Jun 18, 2018
  • ID mapper for biological entities (metabolites, reactions, genes, etc)

    Python 2 Apache-2.0 Updated Jun 17, 2018
  • Predict heterologous pathways for the given organism and chemical of interest

    Python Apache-2.0 Updated Jun 12, 2018
  • JavaScript Apache-2.0 Updated Jun 11, 2018
  • ice

    Forked from JBEI/ice

    Web based Registry platform for managing synthetic biological parts

    Java 18 Updated Jun 6, 2018
  • uploading data to dd-decaf

    Python 1 1 Apache-2.0 Updated Jun 6, 2018
  • Power model service with ILoop data

    Python Apache-2.0 Updated Jun 6, 2018
  • Kubernetes deployment for ILoop service

    Updated Jun 6, 2018
  • TypeScript Apache-2.0 Updated Jun 4, 2018
  • Simple nginx proxy in and the corresponding Dockerfile to relay calls securely to the bigg API

    Shell Updated May 18, 2018
  • Shell Updated May 16, 2018
  • 0

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