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Data-Driven Design of Cell Factories and Communities


  1. tutorials Public

    Teaching materials for cobrapy, cameo, escher and DD-DeCaF

    Jupyter Notebook 16 7

  2. id-mapper Public

    ID mapper for biological entities (metabolites, reactions, genes, etc)

    Python 5 1

  3. simulations Public

    Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc

    Python 1

  4. Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.

    Vue 2 2

  5. Forked from opencobra/memote-webservice

    The backend for the MEMOTE web service.


  6. warehouse Public

    The storage for the experimental data used for modeling: omics, strains, media etc



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