Skip to content
@DD-DeCaF

Data-Driven Design of Cell Factories and Communities

Pinned Loading

  1. tutorials tutorials Public

    Teaching materials for cobrapy, cameo, escher and DD-DeCaF

    Jupyter Notebook 22 8

  2. id-mapper id-mapper Public

    ID mapper for biological entities (metabolites, reactions, genes, etc)

    Python 5 1

  3. simulations simulations Public

    Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc

    Python 1

  4. caffeine-vue caffeine-vue Public

    Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.

    Vue 4 2

  5. memote-webservice memote-webservice Public

    Forked from opencobra/memote-webservice

    The backend for the MEMOTE web service.

    Python

  6. warehouse warehouse Public

    The storage for the experimental data used for modeling: omics, strains, media etc

    Python

Repositories

Showing 10 of 62 repositories
  • caffeine-tombstone Public

    Placeholder website with information on what happened to Caffeine

    DD-DeCaF/caffeine-tombstone’s past year of commit activity
    CSS 1 Apache-2.0 0 0 0 Updated Aug 7, 2024
  • memote-service-frontend Public

    Vue single page application for uploading models and viewing reports.

    DD-DeCaF/memote-service-frontend’s past year of commit activity
    Vue 2 Apache-2.0 0 2 25 Updated Jan 4, 2023
  • caffeine-vue Public

    Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.

    DD-DeCaF/caffeine-vue’s past year of commit activity
    Vue 4 Apache-2.0 2 15 30 Updated Jan 3, 2023
  • DD-DeCaF/caffeine-vue-upload-mockup’s past year of commit activity
    Vue 0 Apache-2.0 0 0 23 Updated Jan 3, 2023
  • tutorials Public

    Teaching materials for cobrapy, cameo, escher and DD-DeCaF

    DD-DeCaF/tutorials’s past year of commit activity
    Jupyter Notebook 22 8 0 0 Updated Jul 12, 2022
  • escher Public Forked from zakandrewking/escher

    Build, view, share, and embed pathway maps.

    DD-DeCaF/escher’s past year of commit activity
    JavaScript 0 79 5 0 Updated Jul 6, 2022
  • website Public

    DD-DeCaF Website

    DD-DeCaF/website’s past year of commit activity
    JavaScript 0 MIT 1 1 0 Updated Jun 23, 2022
  • memote-webservice Public Forked from opencobra/memote-webservice

    The backend for the MEMOTE web service.

    DD-DeCaF/memote-webservice’s past year of commit activity
    Python 0 Apache-2.0 3 1 0 Updated Oct 23, 2021
  • id-mapper Public

    ID mapper for biological entities (metabolites, reactions, genes, etc)

    DD-DeCaF/id-mapper’s past year of commit activity
    Python 5 Apache-2.0 1 5 2 Updated Jul 21, 2021
  • wsgi-base Public

    Base Docker image(s) for WSGI microservices in the DD-DeCaF organization

    DD-DeCaF/wsgi-base’s past year of commit activity
    Makefile 0 Apache-2.0 0 1 1 Updated Jul 21, 2021

Top languages

Loading…

Most used topics

Loading…