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| @Manual{rmarkdown, | |
| title = {rmarkdown: Dynamic Documents for R}, | |
| author = {JJ Allaire and Joe Cheng and Yihui Xie and Jonathan McPherson and Winston Chang and Jeff Allen and Hadley Wickham and Rob Hyndman}, | |
| year = {2015}, | |
| note = {R package version 0.7}, | |
| url = {http://CRAN.R-project.org/package=rmarkdown} | |
| } | |
| @article{maurits_tracing_2014, | |
| title = {Tracing the roots of syntax with {Bayesian} phylogenetics}, | |
| volume = {111}, | |
| doi = {10.1073/pnas.1319042111}, | |
| number = {37}, | |
| journal = {Proceedings of the National Academy of Sciences}, | |
| author = {Maurits, Luke and Griffiths, Thomas L.}, | |
| year = {2014}, | |
| pages = {13576--13581} | |
| } | |
| @article{bouckaert_mapping_2012, | |
| title = {Mapping the Origins and Expansion of the {Indo}-{European} Language Family}, | |
| volume = {337}, | |
| issn = {0036-8075, 1095-9203}, | |
| url = {http://www.sciencemag.org/content/337/6097/957}, | |
| language = {en}, | |
| number = {6097}, | |
| journal = {Science}, | |
| author = {Bouckaert, Remco and Lemey, Philippe and Dunn, Michael and Greenhill, Simon J. and Alekseyenko, Alexander V. and Drummond, Alexei J. and Gray, Russell D. and Suchard, Marc A. and Atkinson, Quentin D.}, | |
| month = aug, | |
| year = {2012}, | |
| pages = {957--960} | |
| } | |
| @article{dunn_evolved_2011, | |
| title = {Evolved structure of language shows lineage-specific trends in word-order universals.}, | |
| volume = {473}, | |
| url = {http://dx.doi.org/10.1038/nature09923}, | |
| doi = {10.1038/nature09923}, | |
| journal = {Nature}, | |
| author = {Dunn, Michael and Greenhill, Simon J. and Levinson, Stephen C. and Gray, Russell D.}, | |
| month = apr, | |
| year = {2011}, | |
| pages = {79--82} | |
| } | |
| @article{ladd_correlational_2015, | |
| title = {Correlational Studies in Typological and Historical Linguistics}, | |
| volume = {1}, | |
| issn = {2333-9683, 2333-9691}, | |
| url = {http://www.annualreviews.org/doi/abs/10.1146/annurev-linguist-030514-124819}, | |
| doi = {10.1146/annurev-linguist-030514-124819}, | |
| language = {en}, | |
| number = {1}, | |
| journal = {Annual Review of Linguistics}, | |
| author = {Ladd, D. Robert and Roberts, Se\'{a}n G. and Dediu, Dan}, | |
| month = jan, | |
| year = {2015}, | |
| pages = {221--241} | |
| } | |
| @article{roberts_linguistic_2013, | |
| title = {Linguistic Diversity and Traffic Accidents: Lessons from Statistical Studies of Cultural Traits}, | |
| volume = {8}, | |
| shorttitle = {Linguistic Diversity and Traffic Accidents}, | |
| url = {http://dx.doi.org/10.1371/journal.pone.0070902}, | |
| doi = {10.1371/journal.pone.0070902}, | |
| number = {8}, | |
| journal = {{PLoS} {ONE}}, | |
| author = {Roberts, Se\`{a}n and Winters, James}, | |
| month = aug, | |
| year = {2013}, | |
| pages = {e70902} | |
| } | |
| @article{mace_comparative_1994, | |
| title = {The comparative method in anthropology}, | |
| volume = {35}, | |
| journal = {Current Anthropology}, | |
| author = {Mace, R. and Pagel, M.}, | |
| year = {1994}, | |
| pages = {549--564} | |
| } | |
| @book{campbell_language_2008, | |
| title = {Language Classification: History and Method}, | |
| publisher = {Cambridge University Press}, | |
| author = {Campbell, Lyle and Poser, William J.}, | |
| year = {2008} | |
| } | |
| @book{bowern_routledge_2014, | |
| title = {The Routledge Handbook of Historical Linguistics}, | |
| isbn = {9781317743248}, | |
| language = {en}, | |
| publisher = {Routledge}, | |
| author = {Bowern, Claire and Evans, Bethwyn}, | |
| month = jul, | |
| year = {2014} | |
| } | |
| @book{wals2013, | |
| address = {Leipzig}, | |
| editor = {Matthew S. Dryer and Martin Haspelmath}, | |
| publisher = {Max Planck Institute for Evolutionary Anthropology}, | |
| title = {WALS Online}, | |
| url = {http://wals.info}, | |
| note = {\url{http://wals.info}}, | |
| year = {2013} | |
| } | |
| @book{lewis_ethnologue_2014, | |
| edition = {17}, | |
| title = {Ethnologue: Languages of the World}, | |
| url = {http://www.ethnologue.com}, | |
| note = {\url{http://www.ethnologue.com}}, | |
| publisher = {Dallas, Tex.: {SIL} International}, | |
| editor = {Lewis, M. Paul and Gary F. Simons and Charles D. Fennig}, | |
| year = {2014} | |
| } | |
| @book{glottolog2014, | |
| address = {Leipzig}, | |
| editor = {Hammarstr\"{o}m, Harald and Forkel, Robert and Haspelmath, Martin and Nordhoff, Sebastian}, | |
| publisher = {Max Planck Institute for Evolutionary Anthropology}, | |
| title = {Glottolog 2.3}, | |
| url = {http://glottolog.org}, | |
| note = {\url{http://glottolog.org}}, | |
| year = {2014} | |
| } | |
| @unpublished{Nicholsetal2013autotyp, | |
| Author = {Nichols, Johanna and Witzlack-Makarevich, Alena and Bickel, Balthasar}, | |
| Note = {Electronic database, \url{http://www.autotyp.uzh.ch}}, | |
| Title = {The \textsc{autotyp} genealogy and geography database: 2013 release}, | |
| Year = {2013} | |
| } | |
| @Manual{R2014, | |
| title = {R: A Language and Environment for Statistical Computing}, | |
| author = {{R Core Team}}, | |
| organization = {R Foundation for Statistical Computing}, | |
| address = {Vienna, Austria}, | |
| year = {2014}, | |
| url = {http://www.R-project.org}, | |
| note = {\url{http://www.R-project.org}} | |
| } | |
| @article{grafen_phylogenetic_1989, | |
| title = {The Phylogenetic Regression}, | |
| volume = {326}, | |
| issn = {0962-8436, 1471-2970}, | |
| url = {http://rstb.royalsocietypublishing.org/content/326/1233/119}, | |
| doi = {10.1098/rstb.1989.0106}, | |
| language = {en}, | |
| number = {1233}, | |
| journal = {Philosophical Transactions of the Royal Society of London. B, Biological Sciences}, | |
| author = {Grafen, A.}, | |
| month = dec, | |
| year = {1989}, | |
| pmid = {2575770}, | |
| pages = {119--157} | |
| } | |
| @article{saitou_neighbor-joining_1987, | |
| title = {The neighbor-joining method: a new method for reconstructing phylogenetic trees.}, | |
| volume = {4}, | |
| issn = {0737-4038, 1537-1719}, | |
| shorttitle = {The neighbor-joining method}, | |
| url = {http://mbe.oxfordjournals.org/content/4/4/406}, | |
| language = {en}, | |
| number = {4}, | |
| journal = {Molecular Biology and Evolution}, | |
| author = {Saitou, N. and Nei, M.}, | |
| month = jul, | |
| year = {1987}, | |
| pmid = {3447015}, | |
| pages = {406--425} | |
| } | |
| @Article{ape2004, | |
| title = {A{PE}: analyses of phylogenetics and evolution in {R} language}, | |
| author = {E. Paradis and J. Claude and K. Strimmer}, | |
| journal = {Bioinformatics}, | |
| year = {2004}, | |
| volume = {20}, | |
| pages = {289-290}, | |
| } | |
| @Article{phangorn2011, | |
| title = {phangorn: phylogenetic analysis in R}, | |
| author = {K.P. Schliep}, | |
| journal = {Bioinformatics}, | |
| year = {2011}, | |
| volume = {27}, | |
| number = {4}, | |
| pages = {592--593}, | |
| } | |
| @Article{GA2013, | |
| title = {{GA}: A Package for Genetic Algorithms in {R}}, | |
| author = {Luca Scrucca}, | |
| journal = {Journal of Statistical Software}, | |
| year = {2013}, | |
| volume = {53}, | |
| number = {4}, | |
| pages = {1--37}, | |
| url = {http://www.jstatsoft.org/v53/i04/}, | |
| } | |
| @article{wichmann_asjp_2013, | |
| title = {The {ASJP} Database (version 16)}, | |
| url = {http://asjp.clld.org/}, | |
| note = {\url{http://asjp.clld.org/}}, | |
| author = {Wichmann, S{\o}ren and Andr\'{e} M\"{u}ller and Annkathrin Wett and Viveka Velupillai and Julia Bischoffberger and Cecil H. Brown and Eric W. Holman and Sebastian Sauppe and Zarina Molochieva and Pamela Brown and Harald Hammarstr\"{o}m and Oleg Belyaev and Johann-Mattis List and Dik Bakker and Dmitry Egorov and Matthias Urban and Robert Mailhammer and Agustina Carrizo and Matthew S. Dryer and Evgenia Korovina and David Beck and Helen Geyer and Pattie Epps and Anthony Grant and Pilar Valenzuela}, | |
| year = {2013} | |
| } | |
| @article{bakker_adding_2009, | |
| title = {Adding typology to lexicostatistics: A combined approach to language classification}, | |
| volume = {13}, | |
| issn = {1430-0532, 1613-415X}, | |
| shorttitle = {Adding typology to lexicostatistics}, | |
| url = {http://www.degruyter.com/view/j/lity.2009.13.issue-1/lity.2009.009/lity.2009.009.xml}, | |
| doi = {10.1515/LITY.2009.009}, | |
| number = {1}, | |
| journal = {Linguistic Typology}, | |
| author = {Bakker, Dik and M\"{u}ller, Andr\'{e} and Velupillai, Viveka and Wichmann, S{\o}ren and Brown, Cecil H. and Brown, Pamela and Egorov, Dmitry and Mailhammer, Robert and Grant, Anthony and Holman, Eric W.}, | |
| month = jan, | |
| year = {2009} | |
| } | |
| @Manual{geosphere2014, | |
| title = {geosphere: Spherical Trigonometry}, | |
| author = {Robert J. Hijmans}, | |
| year = {2014}, | |
| note = {R package version 1.3-11}, | |
| url = {http://CRAN.R-project.org/package=geosphere}, | |
| } | |
| @Maual{cluster2015, | |
| title = {cluster: Cluster Analysis Basics and Extensions}, | |
| author = {Martin Maechler and Peter Rousseeuw and Anja Struyf and Mia Hubert and Kurt Hornik}, | |
| year = {2015}, | |
| note = {R package version 2.0.1}, | |
| } | |
| @article{gower_general_1971, | |
| title = {A General Coefficient of Similarity and Some of Its Properties}, | |
| volume = {27}, | |
| copyright = {Copyright © 1971 International Biometric Society}, | |
| issn = {0006-341X}, | |
| url = {http://www.jstor.org/stable/2528823}, | |
| doi = {10.2307/2528823}, | |
| number = {4}, | |
| journal = {Biometrics}, | |
| author = {Gower, J. C.}, | |
| month = dec, | |
| year = {1971}, | |
| pages = {857--871} | |
| } | |
| @article{maddison_nexus_1997, | |
| title = {Nexus: An Extensible File Format for Systematic Information}, | |
| volume = {46}, | |
| issn = {1063-5157, 1076-836X}, | |
| shorttitle = {Nexus}, | |
| url = {http://sysbio.oxfordjournals.org/content/46/4/590}, | |
| doi = {10.1093/sysbio/46.4.590}, | |
| language = {en}, | |
| number = {4}, | |
| journal = {Systematic Biology}, | |
| author = {Maddison, David R. and Swofford, David L. and Maddison, Wayne P.}, | |
| month = dec, | |
| year = {1997}, | |
| pmid = {11975335}, | |
| pages = {590--621} | |
| } | |
| @inproceedings{lmucs-papers_Leisch_2002, | |
| author = {Friedrich Leisch}, | |
| title = {Sweave: Dynamic Generation of Statistical Reports Using | |
| Literate Data Analysis}, | |
| booktitle = {Compstat 2002 --- Proceedings in Computational | |
| Statistics}, | |
| pages = {575--580}, | |
| year = 2002, | |
| editor = {Wolfgang H{\"a}rdle and Bernd R{\"o}nz}, | |
| publisher = {Physica Verlag, Heidelberg}, | |
| note = {ISBN 3-7908-1517-9}, | |
| url = {http://www.stat.uni-muenchen.de/~leisch/Sweave} | |
| } | |
| @article{penny_use_1985, | |
| title = {The Use of Tree Comparison Metrics}, | |
| volume = {34}, | |
| issn = {1063-5157, 1076-836X}, | |
| url = {http://sysbio.oxfordjournals.org/content/34/1/75}, | |
| doi = {10.1093/sysbio/34.1.75}, | |
| language = {en}, | |
| number = {1}, | |
| journal = {Systematic Biology}, | |
| author = {Penny, David and Hendy, M. D.}, | |
| month = mar, | |
| year = {1985}, | |
| pages = {75--82} | |
| } | |
| @article{rzhetsky_simple_1992, | |
| title = {A simple method for estimating and testing minimum-evolution trees}, | |
| volume = {9}, | |
| url = {http://test.scripts.psu.edu/nxm2/1992%20Publications/1992-rzhetsky-nei.pdf}, | |
| number = {5}, | |
| urldate = {2015-02-14}, | |
| journal = {Mol. Biol. Evol}, | |
| author = {Rzhetsky, Andrey and Nei, Masatoshi}, | |
| year = {1992}, | |
| pages = {945--967} | |
| } | |
| @article{kuhner_simulation_1994, | |
| title = {A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates}, | |
| volume = {11}, | |
| issn = {0737-4038}, | |
| language = {eng}, | |
| number = {3}, | |
| journal = {Molecular Biology and Evolution}, | |
| author = {Kuhner, M. K. and Felsenstein, J.}, | |
| month = may, | |
| year = {1994}, | |
| pmid = {8015439}, | |
| keywords = {Algorithms, Biological Evolution, Computer Simulation, Phylogeny}, | |
| pages = {459--468} | |
| } | |
| @article{chang_ancestry-constrained_2015, | |
| title = {Ancestry-constrained phylogenetic analysis supports the {Indo}-{European} steppe hypothesis}, | |
| volume = {91}, | |
| number = {1}, | |
| urldate = {2015-02-20}, | |
| journal = {Language}, | |
| author = {Chang, Will and Cathcart, Chundra and Hall, David and Garrett, Andrew}, | |
| year = {2015}, | |
| pages = {194--244} | |
| } |