diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 1058e7e..ed1cd73 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -46,7 +46,6 @@ jobs:
         xcopy ddi-lifecycle-all-outputs\xsd ddi-lifecycle\xsd /E /I
         xcopy ddi-lifecycle-all-outputs\json ddi-lifecycle\json /E /I
         xcopy ddi-lifecycle-all-outputs\owl ddi-lifecycle\rdf /E /I
-        xcopy ddi-lifecycle-all-outputs\linkml ddi-lifecycle\rdf /E /I
         ren ddi-lifecycle ddi-lifecycle-${{env.SHORT_SHA}}
         ren ddi-lifecycle-all-outputs ddi-lifecycle-all-outputs-${{env.SHORT_SHA}}
         7z a -tzip "ddi-lifecycle-all-outputs-${{env.SHORT_SHA}}.zip" "ddi-lifecycle-all-outputs-${{ENV.SHORT_SHA}}\*"
diff --git a/build/build-windows.bat b/build/build-windows.bat
index 6c40ef9..2b3f19b 100644
--- a/build/build-windows.bat
+++ b/build/build-windows.bat
@@ -24,9 +24,9 @@ cogs publish-linkml . ddi-lifecycle-all-outputs\linkml --namespace "http://rdf-v
 
 echo Build LinkML
 PUSHD ddi-lifecycle-all-outputs\linkml
-CALL gen-owl --metadata-profile rdfs -f ttl linkml.yml > ddi4.owl.ttl
-CALL gen-shacl linkml.yml > ddi4.shacl
-CALL gen-shex linkml.yml > ddi4.shex
+CALL gen-owl --metadata-profile rdfs -f ttl linkml.yml > ..\owl\ddi4.owl.ttl
+CALL gen-shacl linkml.yml > ..\owl\ddi4.shacl
+CALL gen-shex linkml.yml > ..\owl\ddi4.shex
 POPD
 
 REM cogs publish-dot . --location ddi-lifecycle-all-outputs\dot graphviz\release\bin\dot.exe --overwrite --single