diff --git a/deno.json b/deno.json
index 3367cfa..3a39ba8 100644
--- a/deno.json
+++ b/deno.json
@@ -19,7 +19,7 @@
     "deno",
     "src/rs_lib/target",
     "target",
-    "tests/jsx/testdata"
+    "tests/**/testdata"
   ],
   "imports": {
     "@david/dax": "jsr:@david/dax@^0.43.2",
diff --git a/src/rs_lib/lib.rs b/src/rs_lib/lib.rs
index ac78e64..05d54a6 100644
--- a/src/rs_lib/lib.rs
+++ b/src/rs_lib/lib.rs
@@ -16,6 +16,7 @@ use deno_cache_dir::file_fetcher::NullBlobStore;
 use deno_graph::MediaType;
 use deno_graph::Module;
 use deno_graph::ModuleGraph;
+use deno_graph::Position;
 use deno_graph::analysis::ModuleAnalyzer;
 use deno_graph::ast::DefaultModuleAnalyzer;
 use deno_graph::ast::EsParser;
@@ -339,10 +340,9 @@ impl DenoLoader {
     &mut self,
     roots: Vec<String>,
   ) -> Result<(), anyhow::Error> {
-    let cwd = self.workspace_factory.initial_cwd();
     let roots = roots
       .into_iter()
-      .map(|e| parse_entrypoint(e, &cwd))
+      .map(|e| self.resolve_entrypoint(e))
       .collect::<Result<Vec<_>, _>>()?;
     let npm_package_info_provider = self
       .npm_installer_factory
@@ -441,9 +441,7 @@ impl DenoLoader {
         )?,
       ),
       None => {
-        let entrypoint =
-          parse_entrypoint(specifier, self.workspace_factory.initial_cwd())?
-            .to_string();
+        let entrypoint = self.resolve_entrypoint(specifier)?.to_string();
         (
           entrypoint,
           deno_path_util::url_from_file_path(
@@ -599,6 +597,26 @@ impl DenoLoader {
       Ok(Cow::Borrowed(source.as_bytes()))
     }
   }
+
+  fn resolve_entrypoint(
+    &self,
+    specifier: String,
+  ) -> Result<Url, anyhow::Error> {
+    let cwd = self.workspace_factory.initial_cwd();
+    if specifier.contains('\\') {
+      return Ok(deno_path_util::url_from_file_path(&resolve_absolute_path(
+        specifier, cwd,
+      ))?);
+    }
+    let referrer = deno_path_util::url_from_directory_path(cwd)?;
+    Ok(self.resolver.resolve(
+      &specifier,
+      &referrer,
+      Position::zeroed(),
+      node_resolver::ResolutionMode::Import,
+      node_resolver::NodeResolutionKind::Execution,
+    )?)
+  }
 }
 
 fn create_module_response(
@@ -641,24 +659,6 @@ fn create_external_repsonse(url: &Url) -> JsValue {
   obj.into()
 }
 
-fn parse_entrypoint(
-  entrypoint: String,
-  cwd: &Path,
-) -> Result<Url, anyhow::Error> {
-  if entrypoint.starts_with("jsr:")
-    || entrypoint.starts_with("https:")
-    || entrypoint.starts_with("http:")
-    || entrypoint.starts_with("file:")
-    || entrypoint.starts_with("npm:")
-  {
-    Ok(Url::parse(&entrypoint)?)
-  } else {
-    Ok(deno_path_util::url_from_file_path(&resolve_absolute_path(
-      entrypoint, cwd,
-    ))?)
-  }
-}
-
 fn resolve_absolute_path(path: String, cwd: &Path) -> PathBuf {
   let path = sys_traits::impls::wasm_string_to_path(path);
   cwd.join(path)
diff --git a/tests/helpers.ts b/tests/helpers.ts
index 7563334..a58a575 100644
--- a/tests/helpers.ts
+++ b/tests/helpers.ts
@@ -21,8 +21,19 @@ export async function createLoader(
   };
 }
 
-export function assertResponseText(response: LoadResponse, text: string) {
+export function assertResponseText(
+  response: LoadResponse,
+  text: string,
+  opts?: { skipSourceMap?: boolean },
+) {
   assertEquals(response.kind, "module");
   const moduleResponse = response as ModuleLoadResponse;
-  assertEquals(new TextDecoder().decode(moduleResponse.code), text);
+  let actualText = new TextDecoder().decode(moduleResponse.code);
+  if (opts?.skipSourceMap) {
+    actualText = actualText.replace(
+      /\/\/# sourceMappingURL=.*$/,
+      "",
+    );
+  }
+  assertEquals(actualText, text);
 }
diff --git a/tests/jsx/main.test.ts b/tests/jsx/main.test.ts
index 1d7393b..4066ee0 100644
--- a/tests/jsx/main.test.ts
+++ b/tests/jsx/main.test.ts
@@ -1,9 +1,9 @@
-import { assert } from "node:console";
 import {
   assertResponseText,
   createLoader,
   ResolutionMode,
 } from "../helpers.ts";
+import { assert } from "@std/assert";
 
 Deno.test("loads jsx transpiled", async () => {
   const mainJsx = import.meta.dirname + "/testdata/main.jsx";
diff --git a/tests/link_jsr_entrypoint/main.test.ts b/tests/link_jsr_entrypoint/main.test.ts
new file mode 100644
index 0000000..6de65c8
--- /dev/null
+++ b/tests/link_jsr_entrypoint/main.test.ts
@@ -0,0 +1,26 @@
+import {
+  assertResponseText,
+  createLoader,
+  ResolutionMode,
+} from "../helpers.ts";
+
+Deno.test("loads linked entrypoint", async () => {
+  const mainFile = import.meta.dirname + "/testdata/main/main.ts";
+  const { loader } = await createLoader({
+    configPath: import.meta.dirname + "/testdata/main/deno.json",
+  }, {
+    entrypoints: [mainFile, "jsr:@denotest/add", "@denotest/add"],
+  });
+
+  const response = await loader.load(
+    loader.resolve("@denotest/add", undefined, ResolutionMode.Import),
+  );
+  assertResponseText(
+    response,
+    `export function add(a, b) {
+  return a + b;
+}
+`,
+    { skipSourceMap: true },
+  );
+});
diff --git a/tests/link_jsr_entrypoint/testdata/add/deno.json b/tests/link_jsr_entrypoint/testdata/add/deno.json
new file mode 100644
index 0000000..40e4179
--- /dev/null
+++ b/tests/link_jsr_entrypoint/testdata/add/deno.json
@@ -0,0 +1,4 @@
+{
+  "name": "@denotest/add",
+  "exports": "./mod.ts"
+}
diff --git a/tests/link_jsr_entrypoint/testdata/add/mod.ts b/tests/link_jsr_entrypoint/testdata/add/mod.ts
new file mode 100644
index 0000000..3b39966
--- /dev/null
+++ b/tests/link_jsr_entrypoint/testdata/add/mod.ts
@@ -0,0 +1,3 @@
+export function add(a: number, b: number) {
+  return a + b;
+}
diff --git a/tests/link_jsr_entrypoint/testdata/main/deno.json b/tests/link_jsr_entrypoint/testdata/main/deno.json
new file mode 100644
index 0000000..51c4f91
--- /dev/null
+++ b/tests/link_jsr_entrypoint/testdata/main/deno.json
@@ -0,0 +1,5 @@
+{
+  "links": [
+    "../add"
+  ]
+}
diff --git a/tests/link_jsr_entrypoint/testdata/main/main.ts b/tests/link_jsr_entrypoint/testdata/main/main.ts
new file mode 100644
index 0000000..1ca6314
--- /dev/null
+++ b/tests/link_jsr_entrypoint/testdata/main/main.ts
@@ -0,0 +1,3 @@
+import { add } from "@denotest/add";
+
+console.log(add(1, 2));