diff --git a/deno b/deno
index 038d5a5..354880e 160000
--- a/deno
+++ b/deno
@@ -1 +1 @@
-Subproject commit 038d5a5331abbbdb1c951dc7c6e8e7400671f4e2
+Subproject commit 354880e49dd34e53158b9166890e51b45207194c
diff --git a/src/rs_lib/lib.rs b/src/rs_lib/lib.rs
index 1c06892..7440a1f 100644
--- a/src/rs_lib/lib.rs
+++ b/src/rs_lib/lib.rs
@@ -484,6 +484,11 @@ impl DenoLoader {
           parser: &DefaultEsParser,
         };
         let mut graph = self.graph.deep_clone();
+        if graph.roots.is_empty() {
+          if let Some(lockfile) = lockfile {
+            lockfile.fill_graph(&mut graph);
+          }
+        }
         graph
           .build(
             entrypoints,