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@UCSantaCruzComputationalGenomicsLab
  • A simple web page that uses the Google maps API to track time spent in traffic

    HTML 1 Updated Jan 11, 2017
  • Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    C 19 11 Updated Apr 20, 2016
  • Multiple Whole Genome Alignment Testing Suite

    Python 3 Updated Mar 2, 2015
  • Code, docs and experiments for the MSCA project.

    Python 1 Updated Jan 6, 2015
  • quick_plot is a python program that plots one or two column flat files from the command line.

    Python 3 Updated Oct 20, 2014
  • Script to plot 1D data in 2D using the Hilbert Curve. Honestly a pretty terrible visualization technique for conveying information, but it looks cool.

    Python 17 3 Updated Oct 20, 2014
  • Tools to create plots showing N-statistics for genome assemblies

    Python 2 Updated Sep 26, 2014
  • The R function stem() ported to run on the command line for use in pipes!

    C 2 2 Updated Aug 14, 2014
  • Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.

    Python 9 5 Updated Aug 9, 2014
  • CVE-2014-0160 mass scan on the Alexa top sites.

    Python 223 Updated Apr 9, 2014
  • Analysis scripts to generate Tables and Figures for Assemblathon 1

    Python 5 Updated Nov 7, 2013
  • cairo_visualization_wheel is a Python script that uses matplotlib to create visualization wheels as seen in Alberto Cairo's book The Functional Art http://www.thefunctionalart.com/2012/09/download-three-chapters-of-functional.html (see Figure 3.2).

    Python 2 1 Updated Oct 4, 2013
  • Script to handle superscripted numbers for academic papers that have many authors (>20) and complex affiliations

    Python 2 Updated Oct 4, 2013
  • summary() from the R project refactored to run on the command line for use in pipes!

    C 3 Updated Oct 1, 2013
  • Convenience function for quick and dirty data analysis

    JavaScript 9 Updated Nov 24, 2012
  • Given a multiple sequence alignment and a phylogeny relating the aligned sequences, StatSigMAw assesses every site of the alignment and identifies suspiciously aligned regions in the alignment. Xiaoyu Chen and Martin Tompa, "Comparative assessment of methods for aligning multiple genome sequences". Nature Biotechnology, vol. 28, no. 6, June 2010…

    C Updated Oct 13, 2012
  • Utility to mask fasta formated files using a .bed file to define the regions to mask.

    C 1 Updated Aug 12, 2012
  • Signaling Pathway Impact Analysis (SPIA) refactored into C

    C 1 1 Updated Jul 10, 2012
  • jobTree based python wrapper to run the genome simulation tool suite Evolver

    Python 3 Updated Apr 27, 2012
  • Scripts and Makefile to generate infile set for the Evolver suite of genome evolution simulation tools.

    Python 1 Updated Apr 18, 2012
  • mafJoin is a tool for combining pairs of MAF files that share a common sequence.

    Python 1 Updated Mar 15, 2012
  • A script to make Fisher-Wright Coalescent plots using dot from graphviz

    Python 1 Updated Mar 3, 2012
  • Ancestral Variation Graph (AVG) viewer in javascript

    JavaScript 2 Updated Oct 17, 2011