RADmissing

Analysis of missing data in simulated and empirical RAD data sets.

Notebooks:

I. Simulation of RAD-seq data and analysis of missing data

• Simulations

II. Assembly of 10 empirical RAD-seq data sets

• Nadeau et al. (Heliconius)
• Eaton et al. (Viburnum)
• Herrera et al. (Barnacles)
• McCluskey & Postlethwait (Danio)
• DaCosta & Sorenson (Finches)
• Eaton & Ree (Pedicularis)
• Takahashi et al. (Ohomopterus)
• Takahashi & Moreno (Orestias)
• Eaton et al. (Quercus)
• Leache et al. (Phrynosomatiadae)

III. Model fitting to predict missing data

• PGLS

IV. Measuring hierarchical redundancy

• Hierarchical (Fig. 4)