Analysis of missing data in simulated and empirical RAD data sets.
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LICENSE
README.md
emp_and_sims_nb_pgls.ipynb
emp_nb_Barnacles.ipynb
emp_nb_Danio.ipynb
emp_nb_Finches.ipynb
emp_nb_Heliconius.ipynb
emp_nb_Ohomopterus.ipynb
emp_nb_Orestias.ipynb
emp_nb_Pedicularis.ipynb
emp_nb_Phrynosomatidae.ipynb
emp_nb_Quercus.ipynb
emp_nb_Viburnum.ipynb
emp_nb_measure_hierarchical.ipynb
empirical_10_SraRunTable.txt
empirical_2_SraRunTable.txt
empirical_3_SraRunTable.txt
empirical_6_SraRunTable.txt
empirical_7_SraRunTable.txt
empirical_8_SraRunTable.txt
empirical_9_EraRunTable.txt
empirical_9_flycatchers_SraRunTable.txt
old_sim_nb.ipynb
sims_nb_simulations.ipynb

README.md

RADmissing

Analysis of missing data in simulated and empirical RAD data sets.

Notebooks:

I. Simulation of RAD-seq data and analysis of missing data

II. Assembly of 10 empirical RAD-seq data sets

III. Model fitting to predict missing data

IV. Measuring hierarchical redundancy