🌠 Hephaestus - Data warehouse and ETL tools for open source EMRs
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
docs
notes
src/hephaestus
tests
.coveragerc
.gitignore
.travis.yml
AUTHORS.rst
CHANGELOG.rst
LICENSE.txt
README.md
requirements.txt
setup.cfg
setup.py

README.md

🌠 Hephaestus - Data warehouse and ETL tools for open source EMRs!

About

The OHDSI - OMOP Common Data Model allows for the systematic analysis of disparate observational databases and EMRs. The data from disparate systems needs to be extracted, transformed and loaded on to a CDM database. Once a database has been converted to the OMOP CDM, evidence can be generated using standardized analytics tools.

Each data source requires customized ETL tools for this conversion. 🌠 Hephestus is a tool for this ETL process organized into modules to allow code reuse between various ETL tools for open-source EMR systems and data sources. 🌠 Hephestus uses SqlAlchemy for database connection and automapping tables to classes and bonobo for managing ETL.

Supported systems

How to use

Work in progress. Do not use in production

Contributors

Bell Eapen | McMaster U

Citation


@misc{eapenbr2018Hephaestus,
  title={Hephaestus - Data warehouse and ETL tools for open source EMRs.},
  author={Eapen, Bell Raj and contributors},
  year={2018},
  publisher={GitHub},
  journal = {GitHub repository},
  howpublished={\url{https://github.com/dermatologist/hephaestus}}
}