From 1b64452bd806d36fe5287def08ccc66074d40e75 Mon Sep 17 00:00:00 2001 From: ingalls Date: Tue, 8 Feb 2022 09:27:19 -0700 Subject: [PATCH 1/3] Refactor task into module --- tasks/task-build/lib/ptserving.js | 8 +- tasks/task-build/lib/tfserving.js | 8 +- tasks/task-build/package-lock.json | 431 ++++++++++++----------------- tasks/task-build/package.json | 3 +- tasks/task-build/task.js | 34 ++- 5 files changed, 195 insertions(+), 289 deletions(-) diff --git a/tasks/task-build/lib/ptserving.js b/tasks/task-build/lib/ptserving.js index 72f445bd..d35e8c89 100644 --- a/tasks/task-build/lib/ptserving.js +++ b/tasks/task-build/lib/ptserving.js @@ -1,10 +1,8 @@ 'use strict'; -const CP = require('child_process'); -const path = require('path'); -const fs = require('fs'); +import CP from 'child_process'; -async function docker(tmp, model, tagged_model) { +async function docker(tmp) { console.error('ok - pulling tensorflow/serving docker image'); CP.execSync(` @@ -45,4 +43,4 @@ async function docker(tmp, model, tagged_model) { return tag; } -module.exports = docker; +export default docker; diff --git a/tasks/task-build/lib/tfserving.js b/tasks/task-build/lib/tfserving.js index 474c2847..90c4a6bc 100644 --- a/tasks/task-build/lib/tfserving.js +++ b/tasks/task-build/lib/tfserving.js @@ -1,10 +1,8 @@ 'use strict'; -const CP = require('child_process'); -const path = require('path'); -const fs = require('fs'); +import CP from 'child_process'; -function docker(tmp, model, tagged_model) { +function docker(tmp) { console.error('ok - pulling tensorflow/serving docker image'); CP.execSync(` @@ -45,4 +43,4 @@ function docker(tmp, model, tagged_model) { return tag; } -module.exports = docker; +export default docker; diff --git a/tasks/task-build/package-lock.json b/tasks/task-build/package-lock.json index f50b579c..857a9971 100644 --- a/tasks/task-build/package-lock.json +++ b/tasks/task-build/package-lock.json @@ -23,14 +23,14 @@ } }, "node_modules/@eslint/eslintrc": { - "version": "1.0.4", - "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-1.0.4.tgz", - "integrity": "sha512-h8Vx6MdxwWI2WM8/zREHMoqdgLNXEL4QX3MWSVMdyNJGvXVOs+6lp+m2hc3FnuMHDc4poxFNI20vCk0OmI4G0Q==", + "version": "1.0.5", + "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-1.0.5.tgz", + "integrity": "sha512-BLxsnmK3KyPunz5wmCCpqy0YelEoxxGmH73Is+Z74oOTMtExcjkr3dDR6quwrjh1YspA8DH9gnX1o069KiS9AQ==", "dev": true, "dependencies": { "ajv": "^6.12.4", "debug": "^4.3.2", - "espree": "^9.0.0", + "espree": "^9.2.0", "globals": "^13.9.0", "ignore": "^4.0.6", "import-fresh": "^3.2.1", @@ -42,13 +42,22 @@ "node": "^12.22.0 || ^14.17.0 || >=16.0.0" } }, + "node_modules/@eslint/eslintrc/node_modules/ignore": { + "version": "4.0.6", + "resolved": "https://registry.npmjs.org/ignore/-/ignore-4.0.6.tgz", + "integrity": "sha512-cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg==", + "dev": true, + "engines": { + "node": ">= 4" + } + }, "node_modules/@humanwhocodes/config-array": { - "version": "0.6.0", - "resolved": "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.6.0.tgz", - "integrity": "sha512-JQlEKbcgEUjBFhLIF4iqM7u/9lwgHRBcpHrmUNCALK0Q3amXN6lxdoXLnF0sm11E9VqTmBALR87IlUg1bZ8A9A==", + "version": "0.9.3", + "resolved": "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.9.3.tgz", + "integrity": "sha512-3xSMlXHh03hCcCmFc0rbKp3Ivt2PFEJnQUJDDMTJQ2wkECZWdq4GePs2ctc5H8zV+cHPaq8k2vU8mrQjA6iHdQ==", "dev": true, "dependencies": { - "@humanwhocodes/object-schema": "^1.2.0", + "@humanwhocodes/object-schema": "^1.2.1", "debug": "^4.1.1", "minimatch": "^3.0.4" }, @@ -63,9 +72,9 @@ "dev": true }, "node_modules/acorn": { - "version": "8.6.0", - "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.6.0.tgz", - "integrity": "sha512-U1riIR+lBSNi3IbxtaHOIKdH8sLFv3NYfNv8sg7ZsNhcfl4HF2++BfqqrNAxoCLQW1iiylOj76ecnaUxz+z9yw==", + "version": "8.7.0", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.7.0.tgz", + "integrity": "sha512-V/LGr1APy+PXIwKebEWrkZPwoeoF+w1jiOBUmuxuiUIaOHtob8Qc9BTrYo7VuI5fR8tqsy+buA2WFooR5olqvQ==", "dev": true, "bin": { "acorn": "bin/acorn" @@ -98,15 +107,6 @@ "url": "https://github.com/sponsors/epoberezkin" } }, - "node_modules/ansi-colors": { - "version": "4.1.1", - "resolved": "https://registry.npmjs.org/ansi-colors/-/ansi-colors-4.1.1.tgz", - "integrity": "sha512-JoX0apGbHaUJBNl6yF+p6JAFYZ666/hhCGKN5t9QFjbJQKUU/g8MNbFDbvfrgKXvI1QpZplPOnwIo99lX/AAmA==", - "dev": true, - "engines": { - "node": ">=6" - } - }, "node_modules/ansi-regex": { "version": "5.0.1", "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz", @@ -159,14 +159,14 @@ "integrity": "sha1-x57Zf380y48robyXkLzDZkdLS3k=" }, "node_modules/aws-sdk": { - "version": "2.1039.0", - "resolved": "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1039.0.tgz", - "integrity": "sha512-vrWWUNkRp+psMj56tKhTSKAXtROz2ccQ0NamMt/OS8jEt54ZIhjMeJDkbRucMEPQCeWR8Ma2g6ITmZPVDwUYaw==", + "version": "2.1070.0", + "resolved": "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1070.0.tgz", + "integrity": "sha512-tkmuycoJ9k0qF1iq03iqyhevxP3l0OlrnUxjd0x8nZ9Ko1TGjyj0yJS4Vbd4r5RBpKUwRqedB7TAyZ/71mcZKw==", "dependencies": { "buffer": "4.9.2", "events": "1.1.1", "ieee754": "1.1.13", - "jmespath": "0.15.0", + "jmespath": "0.16.0", "querystring": "0.2.0", "sax": "1.2.1", "url": "0.10.3", @@ -452,18 +452,6 @@ "safer-buffer": "^2.1.0" } }, - "node_modules/enquirer": { - "version": "2.3.6", - "resolved": "https://registry.npmjs.org/enquirer/-/enquirer-2.3.6.tgz", - "integrity": "sha512-yjNnPr315/FjS4zIsUxYguYUPP2e1NK4d7E7ZOLiyYCcbFBiTMyID+2wvm2w6+pZ/odMA7cRkjhsPbltwBOrLg==", - "dev": true, - "dependencies": { - "ansi-colors": "^4.1.1" - }, - "engines": { - "node": ">=8.6" - } - }, "node_modules/escape-string-regexp": { "version": "4.0.0", "resolved": "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-4.0.0.tgz", @@ -477,24 +465,23 @@ } }, "node_modules/eslint": { - "version": "8.3.0", - "resolved": "https://registry.npmjs.org/eslint/-/eslint-8.3.0.tgz", - "integrity": "sha512-aIay56Ph6RxOTC7xyr59Kt3ewX185SaGnAr8eWukoPLeriCrvGjvAubxuvaXOfsxhtwV5g0uBOsyhAom4qJdww==", + "version": "8.8.0", + "resolved": "https://registry.npmjs.org/eslint/-/eslint-8.8.0.tgz", + "integrity": "sha512-H3KXAzQGBH1plhYS3okDix2ZthuYJlQQEGE5k0IKuEqUSiyu4AmxxlJ2MtTYeJ3xB4jDhcYCwGOg2TXYdnDXlQ==", "dev": true, "dependencies": { - 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"version": "7.3.5", - "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.5.tgz", - "integrity": "sha512-PoeGJYh8HK4BTO/a9Tf6ZG3veo/A7ZVsYrSA6J8ny9nb3B1VrpkuN+z9OE5wfE5p6H4LchYZsegiQgbJD94ZFQ==", - "dev": true, - "requires": { - "lru-cache": "^6.0.0" - } + "version": "6.3.0", + "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.0.tgz", + "integrity": "sha512-b39TBaTSfV6yBrapU89p5fKekE2m/NwnDocOVruQFS1/veMgdzuPcnOM34M6CwxW8jH/lxEa5rBoDeUwu5HHTw==", + "dev": true }, "setimmediate": { "version": "1.0.5", @@ -3057,9 +2968,9 @@ "dev": true }, "sshpk": { - "version": "1.16.1", - "resolved": "https://registry.npmjs.org/sshpk/-/sshpk-1.16.1.tgz", - "integrity": "sha512-HXXqVUq7+pcKeLqqZj6mHFUMvXtOJt1uoUx09pFW6011inTMxqI8BA8PM95myrIyyKwdnzjdFjLiE6KBPVtJIg==", + "version": "1.17.0", + "resolved": "https://registry.npmjs.org/sshpk/-/sshpk-1.17.0.tgz", + "integrity": "sha512-/9HIEs1ZXGhSPE8X6Ccm7Nam1z8KcoCqPdI7ecm1N33EzAetWahvQWVqLZtaZQ+IDKX4IyA2o0gBzqIMkAagHQ==", "requires": { "asn1": "~0.2.3", "assert-plus": "^1.0.0", @@ -3111,6 +3022,12 @@ "has-flag": "^4.0.0" } }, + "supports-preserve-symlinks-flag": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/supports-preserve-symlinks-flag/-/supports-preserve-symlinks-flag-1.0.0.tgz", + "integrity": "sha512-ot0WnXS9fgdkgIcePe6RHNk1WA8+muPa6cSjeR3V8K27q9BB1rTE3R1p7Hv0z1ZyAc8s6Vvv8DIyWf681MAt0w==", + "dev": true + }, "text-table": { "version": "0.2.0", "resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz", @@ -3276,12 +3193,6 @@ "version": "9.0.7", "resolved": "https://registry.npmjs.org/xmlbuilder/-/xmlbuilder-9.0.7.tgz", "integrity": "sha1-Ey7mPS7FVlxVfiD0wi35rKaGsQ0=" - }, - "yallist": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz", - "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==", - "dev": true } } } diff --git a/tasks/task-build/package.json b/tasks/task-build/package.json index 476ba9fc..1a4b000f 100644 --- a/tasks/task-build/package.json +++ b/tasks/task-build/package.json @@ -1,11 +1,12 @@ { "name": "batch-task", "version": "1.0.0", + "type": "module", "main": "index.js", "license": "MIT", "private": true, "scripts": { - "lint": "eslint *.js" + "lint": "eslint *.js lib/**/*.js" }, "dependencies": { "aws-sdk": "^2.631.0", diff --git a/tasks/task-build/task.js b/tasks/task-build/task.js index 789833de..74a12f54 100755 --- a/tasks/task-build/task.js +++ b/tasks/task-build/task.js @@ -1,20 +1,18 @@ #!/usr/bin/env node -'use strict'; - -const unzipper = require('unzipper'); -const find = require('find'); -const request = require('request'); -const mkdir = require('mkdirp').sync; -const pipeline = require('stream').pipeline; -const fs = require('fs'); -const fse = require('fs-extra'); -const os = require('os'); -const CP = require('child_process'); -const path = require('path'); -const AWS = require('aws-sdk'); - -const TFServing = require('./lib/tfserving'); -// const PyTorchServing = require('./lib/ptserving'); +import unzipper from 'unzipper'; +import find from 'find'; +import request from 'request'; +import mkdir from 'mkdirp'; +import { pipeline } from 'stream'; +import fs from 'fs'; +import fse from 'fs-extra'; +import os from 'os'; +import CP from 'child_process'; +import path from 'path'; +import AWS from 'aws-sdk'; + +import TFServing from './lib/tfserving.js'; +// import PTServing from './lib/ptserving.js'; const batch = new AWS.Batch({ region: process.env.AWS_REGION || 'us-east-1' }); const s3 = new AWS.S3({ region: process.env.AWS_REGION || 'us-east-1' }); @@ -171,7 +169,7 @@ function std_model(tmp) { path.parse(files[0]).dir; - mkdir(tmp + '/MODEL/001'); + mkdir.sync(tmp + '/MODEL/001'); fse.move(path.parse(files[0]).dir, tmp + '/MODEL/001/', { overwrite: true @@ -232,7 +230,7 @@ function dockerd() { async function docker(tmp, model) { const tagged_model = model.split('/').splice(1).join('-').replace(/-model\.zip/, ''); - const tag = TFServing(tmp, model, tagged_model); + const tag = TFServing(tmp); const push = `${process.env.AWS_ACCOUNT_ID}.dkr.ecr.${process.env.AWS_REGION}.amazonaws.com/${process.env.BATCH_ECR}:${tagged_model}`; CP.execSync(` From 1bd37779fc459257fb1bd4e7f8bd2756f30b5d7e Mon Sep 17 00:00:00 2001 From: ingalls Date: Tue, 8 Feb 2022 09:50:27 -0700 Subject: [PATCH 2/3] Add convert.py for converting H5 to PB --- tasks/task-build/.eslintrc.json | 21 +++++++++++++-------- tasks/task-build/Dockerfile | 2 +- tasks/task-build/lib/convert.py | 5 +++++ tasks/task-build/task.js | 14 ++++++++++++++ 4 files changed, 33 insertions(+), 9 deletions(-) create mode 100644 tasks/task-build/lib/convert.py diff --git a/tasks/task-build/.eslintrc.json b/tasks/task-build/.eslintrc.json index 51186da4..60e0e9e4 100644 --- a/tasks/task-build/.eslintrc.json +++ b/tasks/task-build/.eslintrc.json @@ -1,11 +1,18 @@ { "extends": "eslint:recommended", - "parserOptions": { - "ecmaVersion": 8 - }, + "root": true, "env": { - "node": true, - "es6": true + "node": true + }, + "globals": { + "Map": true, + "Promise": true, + "Uint8Array": true, + "BigInt": true + }, + "parserOptions": { + "sourceType": "module", + "ecmaVersion": 13 }, "plugins": [ "node" ], "rules": { @@ -35,10 +42,8 @@ "keyword-spacing": [ "error", { "before": true, "after": true } ], "template-curly-spacing": [ "error", "never" ], "semi-spacing": "error", - "strict": "error", - "node/no-unsupported-features": [ "error", { "version": 8 } ], "node/no-missing-require": "error", - "valid-jsdoc": ["warn", { + "valid-jsdoc": ["error", { "requireParamDescription": false, "requireReturnDescription": false, "requireReturnType": false, diff --git a/tasks/task-build/Dockerfile b/tasks/task-build/Dockerfile index fc467fd9..6452ff14 100644 --- a/tasks/task-build/Dockerfile +++ b/tasks/task-build/Dockerfile @@ -13,7 +13,7 @@ RUN apk -v --update add \ mailcap \ && python3 -m ensurepip \ && pip3 install --upgrade pip \ - && pip3 install --upgrade awscli==1.14.5 s3cmd==2.0.1 python-magic + && pip3 install --upgrade awscli==1.14.5 s3cmd==2.0.1 python-magic tensorflow==2.7.0 WORKDIR /usr/local/src/batch ADD . /usr/local/src/batch diff --git a/tasks/task-build/lib/convert.py b/tasks/task-build/lib/convert.py new file mode 100644 index 00000000..3a7aff27 --- /dev/null +++ b/tasks/task-build/lib/convert.py @@ -0,0 +1,5 @@ +""" convert an H5 Model to .PB""" +import tensorflow as tf + +pre_model = tf.keras.models.load_model("final_model.h5") +pre_model.save("saved_model") diff --git a/tasks/task-build/task.js b/tasks/task-build/task.js index 74a12f54..0bc6d2ec 100755 --- a/tasks/task-build/task.js +++ b/tasks/task-build/task.js @@ -55,6 +55,8 @@ async function main() { await get_zip(tmp, model); + await h5_convert(tmp); + await std_model(tmp); const finalLinks = await docker(tmp, model); @@ -161,6 +163,18 @@ function set_link(project, iteration, patch) { }); } +function h5_convert(tmp) { + return new Promise((resolve) => { + find.file(/\.h5$/, path.resolve(tmp, '/src'), (files) => { + if (files.length === 0) return resolve(); + + CP.execSync(` + python3 ./lib/convert.py ${files[0]} + `); + }); + }); +} + function std_model(tmp) { return new Promise((resolve, reject) => { find.file('saved_model.pb', path.resolve(tmp, '/src'), (files) => { From dad2c45e23cfd8778921fb8ef9cc3925ffea791b Mon Sep 17 00:00:00 2001 From: ingalls Date: Tue, 8 Feb 2022 10:18:49 -0700 Subject: [PATCH 3/3] Add Convert Script --- tasks/task-build/lib/convert.py | 7 +++++-- tasks/task-build/task.js | 2 +- 2 files changed, 6 insertions(+), 3 deletions(-) diff --git a/tasks/task-build/lib/convert.py b/tasks/task-build/lib/convert.py index 3a7aff27..e951238c 100644 --- a/tasks/task-build/lib/convert.py +++ b/tasks/task-build/lib/convert.py @@ -1,5 +1,8 @@ """ convert an H5 Model to .PB""" import tensorflow as tf +import sys -pre_model = tf.keras.models.load_model("final_model.h5") -pre_model.save("saved_model") +args = sys.argv[1:] + +pre_model = tf.keras.models.load_model(args[0]) +pre_model.save(args[1]) diff --git a/tasks/task-build/task.js b/tasks/task-build/task.js index 0bc6d2ec..4ae8ff61 100755 --- a/tasks/task-build/task.js +++ b/tasks/task-build/task.js @@ -169,7 +169,7 @@ function h5_convert(tmp) { if (files.length === 0) return resolve(); CP.execSync(` - python3 ./lib/convert.py ${files[0]} + python3 ./lib/convert.py ${files[0]} ${path.resolve(tmp, '/src')} `); }); });