Skip to content
Permalink
main
Switch branches/tags
Go to file
 
 
Cannot retrieve contributors at this time

PalmerPenguins.jl

Build Status Coverage Coverage Code Style: Blue

Load the Palmer penguins dataset, an alternative to the Iris dataset, in Julia.

Overview

The Palmer penguins dataset by Allison Horst, Alison Hill, and Kristen Gorman is a dataset for data exploration & visualization, as an alternative to the Iris dataset.

The dataset contains data for 344 penguins. There are 3 different species of penguins in this dataset, collected from 3 islands in the Palmer Archipelago, Antarctica.

Data were collected and made available by Dr. Kristen Gorman and the Palmer Station, Antarctica LTER, a member of the Long Term Ecological Research Network.

Data are available by CC-0 license in accordance with the Palmer Station LTER Data Policy and the LTER Data Access Policy for Type I data.

More information about the dataset is available in its official documentation.

Usage

The simplified version of the raw data can be loaded by

julia> using PalmerPenguins

julia> table = PalmerPenguins.load()

This will download the data (both the simplified and the raw version) once using DataDeps.jl, displaying the information above and making it available for future use.

The prompt and the confirmation before downloading the data for the first time can be bypassed by setting the DATADEPS_ALWAYS_ACCEPT environment variable. In particular, this is required for non-interactive use such as in continuous integration tests.

The function PalmerPenguins.load() returns a CSV.File object that supports the Tables.jl interface. For instance, it can be converted to a DataFrame by executing

julia> using DataFrames

julia> df = DataFrame(table)

The raw data can be loaded with

julia> tableraw = PalmerPenguins.load(; raw = true)

If raw = false (the default), then the simplified version is returned.

References

Gorman KB, Williams TD, Fraser WR (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE 9(3): e90081. https://doi.org/10.1371/journal.pone.0090081