Methods and data describing filtering COI datasets and database construction.
Paper link forthcoming (open access)
Additional information related to this project:
- NCBI BioProject information available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA518082
- SRA data available at: https://www.ncbi.nlm.nih.gov/sra/PRJNA518082
- Large database files are available at: https://osf.io/k3eh6/
See the docs folder of this repo for information on how each part of the project was performed:
- wet bench work
- sequence filtering
- diversity analyses
- database construction
- database comparisons
- classifier comparisons
Note links are embedded within each document to point you to the particular R or shell scripts used to complete the described action. Scripts are available at this directory if you want to dive right into the code itself.
Supplementary images and tables referred to in the manuscript are hosted at this repo as individual files instead of a single text document. You can find all of this infromation at this directory.
Individual figures used in the main manuscript are hosted [here]. Please contact me at devon@outermostlab.com if you would like to use these images for your own purposes.